Published online 5 January 2006
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Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Josephine Bay Paul Center, Marine Biological Laboratory Woods Hole, MA 02543, USA 1Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems Yata 1111, Mishima, Shizuoka 411-8540, Japan 2Department of Genetics, Candida Genome Database Stanford University School of Medicine Stanford, CA 94305-5120, USA 3Department of Molecular, Cellular and Developmental Biology, Yale University New Haven, CT 06520-8103, USA 4Genome Center of Wisconsin 425 Henry Mall University of Wisconsin Madison, WI 53706, USA 5Division of Immunity and Infection, University of Birmingham Edgbaston, Birmingham B15 2TT, UK 6National Institute for Basic Biology Nishigonaka 38, Myodaiji, Okazaki 444-8585 Aichi, Japan 7SRI International 333 Ravenswood Avenue, Menlo Park, CA 94025-3493, USA 8Graduate School of Biological Sciences, Nara Institute of Science and Technology Ikoma, Nara 630-0101, Japan 9The Institute of Advanced Biosciences, Keio University Tsuruoka, Yamagata 997-0017, Japan 10Department of Biochemistry and Molecular Biology, The University of Miami Miller School of Medicine Miami, FL 33140, USA 11Department of Biology, University of York PO Box 373, York YO10 5YW, UK 12The Wellcome Trust Sanger Institute Genome Campus, Hinxton, Cambridge CB10 1SA, UK 13Department of Computing Science and Biological Sciences, 2-21 Athabasca Hall University of Alberta Edmonton, Alberta, Canada T6G 2E8 14Department of Biological Sciences, Purdue University 915 W. State Street, West Lafayette, IN 47907-2054, USA
*To whom correspondence should be addressed. Tel: +1 508 269 7388; Fax: +1 508 457 4727; Email: mriley{at}mbl.edu
Received November 5, 2005. Revised December 5, 2005. Accepted December 5, 2005.
The goal of this group project has been to coordinate and bring up-to-date information on all genes of Escherichia coli K-12. Annotation of the genome of an organism entails identification of genes, the boundaries of genes in terms of precise start and end sites, and description of the gene products. Known and predicted functions were assigned to each gene product on the basis of experimental evidence or sequence analysis. Since both kinds of evidence are constantly expanding, no annotation is complete at any moment in time. This is a snapshot analysis based on the most recent genome sequences of two E.coli K-12 bacteria. An accurate and up-to-date description of E.coli K-12 genes is of particular importance to the scientific community because experimentally determined properties of its gene products provide fundamental information for annotation of innumerable genes of other organisms. Availability of the complete genome sequence of two K-12 strains allows comparison of their genotypes and mutant status of alleles.
Correspondence may also be addressed to Barry L. Wanner. Tel: +1 765 494 8034; Fax: +1 765 494 0876; Email: blwanner{at}purdue.edu
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