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miRBase: microRNA sequences, targets and gene nomenclature
The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SA, UK
*To whom correspondence should be addressed. Tel: +44 1223 834244; Fax: +44 1223 494919; Email: sgj{at}sanger.ac.uk
Received September 12, 2005. Revised October 18, 2005. Accepted October 18, 2005.
The miRBase database aims to provide integrated interfaces to comprehensive microRNA sequence data, annotation and predicted gene targets. miRBase takes over functionality from the microRNA Registry and fulfils three main roles: the miRBase Registry acts as an independent arbiter of microRNA gene nomenclature, assigning names prior to publication of novel miRNA sequences. miRBase Sequences is the primary online repository for miRNA sequence data and annotation. miRBase Targets is a comprehensive new database of predicted miRNA target genes. miRBase is available at http://microrna.sanger.ac.uk/.
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S. Miller, L. E. Jones, K. Giovannitti, D. Piper, and M. J. Serra Thermodynamic analysis of 5' and 3' single- and 3' double-nucleotide overhangs neighboring wobble terminal base pairs Nucleic Acids Res., October 1, 2008; 36(17): 5652 - 5659. [Abstract] [Full Text] [PDF]
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 Z. Zhang, L. Wei, X. Zou, Y. Tao, Z. Liu, and Y. Zheng Submergence-responsive MicroRNAs are Potentially Involved in the Regulation of Morphological and Metabolic Adaptations in Maize Root Cells Ann. Bot., October 1, 2008; 102(4): 509 - 519. [Abstract] [Full Text] [PDF]
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G. M. Hansen, D. C. Markesich, M. B. Burnett, Q. Zhu, K. M. Dionne, L. J. Richter, R. H. Finnell, A. T. Sands, B. P. Zambrowicz, and A. Abuin Large-scale gene trapping in C57BL/6N mouse embryonic stem cells Genome Res., October 1, 2008; 18(10): 1670 - 1679. [Abstract] [Full Text] [PDF]
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Y.-C. Lin, M.-W. Kuo, J. Yu, H.-H. Kuo, R.-J. Lin, W.-L. Lo, and A. L. Yu c-Myb Is an Evolutionary Conserved miR-150 Target and miR-150/c-Myb Interaction Is Important for Embryonic Development Mol. Biol. Evol., October 1, 2008; 25(10): 2189 - 2198. [Abstract] [Full Text] [PDF]
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 K. Lykke-Andersen, M. J. Gilchrist, J. B. Grabarek, P. Das, E. Miska, and M. Zernicka-Goetz Maternal Argonaute 2 Is Essential for Early Mouse Development at the Maternal-Zygotic Transition Mol. Biol. Cell, October 1, 2008; 19(10): 4383 - 4392. [Abstract] [Full Text] [PDF]
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F.-Z. Wang, F. Weber, C. Croce, C.-G. Liu, X. Liao, and P. E. Pellett Human Cytomegalovirus Infection Alters the Expression of Cellular MicroRNA Species That Affect Its Replication J. Virol., September 15, 2008; 82(18): 9065 - 9074. [Abstract] [Full Text] [PDF]
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D. V. Conti, W. Lee, D. Li, J. Liu, D. Van Den Berg, P. D. Thomas, A. W. Bergen, G. E. Swan, R. F. Tyndale, N. L. Benowitz, et al. Nicotinic acetylcholine receptor {beta}2 subunit gene implicated in a systems-based candidate gene study of smoking cessation Hum. Mol. Genet., September 15, 2008; 17(18): 2834 - 2848. [Abstract] [Full Text] [PDF]
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M. Hussain, R. J. Taft, and S. Asgari An Insect Virus-Encoded MicroRNA Regulates Viral Replication J. Virol., September 15, 2008; 82(18): 9164 - 9170. [Abstract] [Full Text] [PDF]
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 N. J. Martinez, M. C. Ow, M. I. Barrasa, M. Hammell, R. Sequerra, L. Doucette-Stamm, F. P. Roth, V. R. Ambros, and A. J.M. Walhout A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity Genes & Dev., September 15, 2008; 22(18): 2535 - 2549. [Abstract] [Full Text] [PDF]
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