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Nucleic Acids Research 2006 34(Database Issue):D344-D348; doi:10.1093/nar/gkj024
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Nucleic Acids Research, 2006, Vol. 34, Database issue D344-D348
© The Author 2006. Published by Oxford University Press. All rights reserved
The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact journals.permissions{at}oxfordjournals.org

Article

The integrated microbial genomes (IMG) system

Victor M. Markowitz1, Frank Korzeniewski1, Krishna Palaniappan1, Ernest Szeto1, Greg Werner3, Anu Padki3, Xueling Zhao3, Inna Dubchak2, Philip Hugenholtz4, Iain Anderson5, Athanasios Lykidis5, Konstantinos Mavromatis5, Natalia Ivanova5 and Nikos C. Kyrpides5,*

1Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory 1 Cyclotron Road, Berkeley, CA, USA 2Genomics Division, Lawrence Berkeley National Laboratory 1 Cyclotron Road, Berkeley, CA, USA 3Genome Data Systems, Department of Energy Joint Genome Institute 2800 Mitchell Drive, Walnut Creek, CA, USA 4Microbial Ecology Program, Department of Energy Joint Genome Institute 2800 Mitchell Drive, Walnut Creek, CA, USA 5Microbial Genome Analysis Program, Department of Energy Joint Genome Institute 2800 Mitchell Drive, Walnut Creek, CA, USA

*To whom correspondence should be addressed. Tel: +1 925 296 5718; Fax: +1 925 296 5720; Email: NCKyrpides{at}lbl.gov

Received August 5, 2005. Revised September 21, 2005. Accepted September 21, 2005.

The integrated microbial genomes (IMG) system is a new data management and analysis platform for microbial genomes provided by the Joint Genome Institute (JGI). IMG contains both draft and complete JGI genomes integrated with other publicly available microbial genomes of all three domains of life. IMG provides tools and viewers for analyzing genomes, genes and functions, individually or in a comparative context. IMG allows users to focus their analysis on subsets of genes and genomes of interest and to save the results of their analysis. IMG is available at http://img.jgi.doe.gov.


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