Skip Navigation

Nucleic Acids Research 2006 34(Database Issue):D41-D45; doi:10.1093/nar/gkj164
This Article
Right arrow Full Text Freely available
Right arrow Print PDF (1495K) Freely available
Right arrow Screen PDF (231K) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Glasner, J. D.
Right arrow Articles by Perna, N. T.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Glasner, J. D.
Right arrow Articles by Perna, N. T.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2006, Vol. 34, Database issue D41-D45
© The Author 2006. Published by Oxford University Press. All rights reserved
The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact journals.permissions{at}oxfordjournals.org

Article

ASAP: a resource for annotating, curating, comparing, and disseminating genomic data

Jeremy D. Glasner*, Michael Rusch, Paul Liss, Guy Plunkett, III, Eric L. Cabot, Aaron Darling, Bradley D. Anderson, Paul Infield-Harm, Michael C. Gilson and Nicole T. Perna

Genome Center of Wisconsin, University of Wisconsin Madison, WI, USA

*To whom correspondence should be addressed. Email: glasner{at}svm.vetmed.wisc.edu

Received September 27, 2005. Revised November 2, 2005. Accepted November 2, 2005.

ASAP is a comprehensive web-based system for community genome annotation and analysis. ASAP is being used for a large-scale effort to augment and curate annotations for genomes of enterobacterial pathogens and for additional genome sequences. New tools, such as the genome alignment program Mauve, have been incorporated into ASAP in order to improve display and analysis of related genomes. Recent improvements to the database and challenges for future development of the system are discussed. ASAP is available on the web at https://asap.ahabs.wisc.edu/asap/logon.php.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 DatabaseHome page
D. Vallenet, S. Engelen, D. Mornico, S. Cruveiller, L. Fleury, A. Lajus, Z. Rouy, D. Roche, G. Salvignol, C. Scarpelli, et al.
MicroScope: a platform for microbial genome annotation and comparative genomics
Database, November 25, 2009; 2009(0): bap021 - bap021.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
V. M. Markowitz, K. Mavromatis, N. N. Ivanova, I-M. A. Chen, K. Chu, and N. C. Kyrpides
IMG ER: a system for microbial genome annotation expert review and curation
Bioinformatics, September 1, 2009; 25(17): 2271 - 2278.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
A. I. Rissman, B. Mau, B. S. Biehl, A. E. Darling, J. D. Glasner, and N. T. Perna
Reordering contigs of draft genomes using the Mauve Aligner
Bioinformatics, August 15, 2009; 25(16): 2071 - 2073.
[Abstract] [Full Text] [PDF]

Home page
 J. Bacteriol.Home page
T. Durfee, R. Nelson, S. Baldwin, G. Plunkett III, V. Burland, B. Mau, J. F. Petrosino, X. Qin, D. M. Muzny, M. Ayele, et al.
The Complete Genome Sequence of Escherichia coli DH10B: Insights into the Biology of a Laboratory Workhorse
J. Bacteriol., April 1, 2008; 190(7): 2597 - 2606.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
J. D. Glasner, G. Plunkett III, B. D. Anderson, D. J. Baumler, B. S. Biehl, V. Burland, E. L. Cabot, A. E. Darling, B. Mau, E. C. Neeno-Eckwall, et al.
Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D519 - D523.
[Abstract] [Full Text] [PDF]

Home page
 Infect. Immun.Home page
J. M. Greene, F. Collins, E. J. Lefkowitz, D. Roos, R. H. Scheuermann, B. Sobral, R. Stevens, O. White, and V. Di Francesco
National Institute of Allergy and Infectious Diseases Bioinformatics Resource Centers: New Assets for Pathogen Informatics
Infect. Immun., July 1, 2007; 75(7): 3212 - 3219.
[Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.