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Nucleic Acids Research 2006 34(Database Issue):D419-D422; doi:10.1093/nar/gkj078
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Nucleic Acids Research, 2006, Vol. 34, Database issue D419-D422
© The Author 2006. Published by Oxford University Press. All rights reserved
The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact journals.permissions{at}oxfordjournals.org

Article

CryptoDB: a Cryptosporidium bioinformatics resource update

Mark Heiges, Haiming Wang, Edward Robinson, Cristina Aurrecoechea, Xin Gao1,2, Nivedita Kaluskar1, Philippa Rhodes1, Sammy Wang1, Cong-Zhou He1, Yanqi Su1, John Miller1, Eileen Kraemer1 and Jessica C. Kissinger2,*

Center for Tropical and Emerging Global Diseases, University of Georgia Athens, GA, USA 1Department of Computer Science, University of Georgia Athens, GA, USA 2Department of Genetics, University of Georgia Athens, GA, USA

*To whom correspondence should be addressed. Tel: +1 706 542 6562; Fax: +1 706 542 3910; Email: jkissing{at}uga.edu

Received September 15, 2005. Accepted October 11, 2005.

The database, CryptoDB (http://CryptoDB.org), is a community bioinformatics resource for the AIDS-related apicomplexan-parasite, Cryptosporidium. CryptoDB integrates whole genome sequence and annotation with expressed sequence tag and genome survey sequence data and provides supplemental bioinformatics analyses and data-mining tools. A simple, yet comprehensive web interface is available for mining and visualizing the data. CryptoDB is allied with the databases PlasmoDB and ToxoDB via ApiDB, an NIH/NIAID-fundedBioinformatics Resource Center. Recent updates to CryptoDB include the deposition of annotated genome sequences for Cryptosporidium parvum and Cryptosporidium hominis, migration to a relational database (GUS), a new query and visualization interface and the introduction of Web services.


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