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Nucleic Acids Research 2006 34(Database Issue):D507-D510; doi:10.1093/nar/gkj122
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Nucleic Acids Research, 2006, Vol. 34, Database issue D507-D510
© The Author 2006. Published by Oxford University Press. All rights reserved
The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact journals.permissions{at}oxfordjournals.org

Article

LMPD: LIPID MAPS proteome database

Dawn Cotter1, Andreia Maer1, Chittibabu Guda2, Brian Saunders1 and Shankar Subramaniam1,3,*

1San Diego Supercomputer Center, University of California 9500 Gilman Drive, La Jolla, CA 92093-0505, USA 2Gen*NY*sis Center for Excellence in Cancer Genomics and Department of Epidemiology and Biostatistics, University at Albany, State University of New York One Discovery drive, Rensselaer, NY 12144-3456, USA 3Departments of Bioengineering, Chemistry and Biochemistry, University of California 9500 Gilman Drive, La Jolla, CA 92093-0612, USA

*To whom correspondence should be addressed at 9500 Gilman Drive, MC-0505, San Diego, CA 92093-0505, USA. Tel: +1 858 822 0986; Fax: +1 858 822 3752; Email: shankar{at}sdsc.edu

Received August 15, 2005. Revised October 20, 2005. Accepted October 20, 2005.

The LIPID MAPS Proteome Database (LMPD) is an object-relational database of lipid-associated protein sequences and annotations. The initial release contains 2959 records, representing human and mouse proteins involved in lipid metabolism. UniProt IDs were obtained based on keyword search of KEGG and GO databases, and this LMPD protein list was then enhanced with annotations from UniProt, EntrezGene, ENZYME, GO, KEGG and other public resources. We also assigned associations with general lipid categories, based on GO and KEGG annotations. Users may search LMPD by database ID or keyword, and filter by species and/or lipid class associations; from the search results, one can then access a compilation of data relevant to each protein of interest, cross-linked to external databases. The LIPID MAPS Proteome Database (LMPD) is publicly available from the LIPID MAPS Consortium website (http://www.lipidmaps.org/). The direct URL is http://www.lipidmaps.org/data/proteome/index.cgi.


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