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Nucleic Acids Research 2006 34(Database Issue):D717-D723; doi:10.1093/nar/gkj154
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Nucleic Acids Research, 2006, Vol. 34, Database issue D717-D723
© The Author 2006. Published by Oxford University Press. All rights reserved
The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact journals.permissions{at}oxfordjournals.org

Article

Gramene: a bird's eye view of cereal genomes

Pankaj Jaiswal, Junjian Ni, Immanuel Yap, Doreen Ware1,3, William Spooner1, Ken Youens-Clark1, Liya Ren1, Chengzhi Liang1, Wei Zhao1, Kiran Ratnapu1, Benjamin Faga1, Payan Canaran1, Molly Fogleman, Claire Hebbard, Shuly Avraham1, Steven Schmidt1, Terry M. Casstevens2, Edward S. Buckler2,3, Lincoln Stein1 and Susan McCouch*

Department of Plant Breeding 240 Emerson Hall Cornell University Ithaca, NY 14853, USA 1Cold Spring Harbor Laboratory 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA 2Institute for Genomic Diversity, Cornell University Ithaca, NY 14853, USA 3USDA-ARS NAA Plant, Soil & Nutrition Laboratory Research Unit, Cornell University Ithaca, NY 14853, USA

*To whom correspondence should be addressed. Tel: +1 607 255 0420; Fax: +1 607 255 6683; Email: SRM4{at}cornell.edu

Received September 14, 2005. Revised October 31, 2005. Accepted October 31, 2005.

Rice, maize, sorghum, wheat, barley and the other major crop grasses from the family Poaceae (Gramineae) are mankind's most important source of calories and contribute tens of billions of dollars annually to the world economy (FAO 1999, http://www.fao.org; USDA 1997, http://www.usda.gov). Continued improvement of Poaceae crops is necessary in order to continue to feed an ever-growing world population. However, of the major crop grasses, only rice (Oryza sativa), with a compact genome of ~400 Mbp, has been sequenced and annotated. The Gramene database (http://www.gramene.org) takes advantage of the known genetic colinearity (synteny) between rice and the major crop plant genomes to provide maize, sorghum, millet, wheat, oat and barley researchers with the benefits of an annotated genome years before their own species are sequenced. Gramene is a one stop portal for finding curated literature, genetic and genomic datasets related to maps, markers, genes, genomes and quantitative trait loci. The addition of several new tools to Gramene has greatly facilitated the potential for comparative analysis among the grasses and contributes to our understanding of the anatomy, development, environmental responses and the factors influencing agronomic performance of cereal crops. Since the last publication on Gramene database by D. H. Ware, P. Jaiswal, J. Ni, I. V. Yap, X. Pan, K. Y. Clark, L. Teytelman, S. C. Schmidt, W. Zhao, K. Chang et al. [(2002), Plant Physiol., 130, 1606–1613], the database has undergone extensive changes that are described in this publication.


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