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Nucleic Acids Research 2006 34(Web Server issue):W385-W388; doi:10.1093/nar/gkl252
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© The Author 2006. Published by Oxford University Press. All rights reserved
The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact journals.permissions@oxfordjournals.org

Article

Virtual Ribosome—a comprehensive DNA translation tool with support for integration of sequence feature annotation

Rasmus Wernersson*

Center for Biological Sequence Analysis, BioCentrum-DTU, Technical University of Denmark Building 208, DK-2800 Lyngby, Denmark

*Tel: +45 45252485; Fax: + 45 45931585; Email: raz{at}cbs.dtu.dk

Received February 14, 2006. Revised March 1, 2006. Accepted March 20, 2006.

Virtual Ribosome is a DNA translation tool with two areas of focus. (i) Providing a strong translation tool in its own right, with an integrated ORF finder, full support for the IUPAC degenerate DNA alphabet and all translation tables defined by the NCBI taxonomy group, including the use of alternative start codons. (ii) Integration of sequences feature annotation—in particular, native support for working with files containing intron/exon structure annotation. The software is available for both download and online use at http://www.cbs.dtu.dk/services/VirtualRibosome/.


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[Abstract] [Full Text] [PDF]


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