Nucleic Acids Research Advance Access originally published online on December 5, 2006
Nucleic Acids Research 2007 35(Database issue):D26-D31; doi:10.1093/nar/gkl993
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Nucleic Acids Research, 2007, Vol. 35, Database issue D26-D31
Published by Oxford University Press 2006
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
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Entrez Gene: gene-centered information at NCBI
National Center for Biotechnology Information, National Library of Medicine National Institutes of Health, Bethesda, MD 20892-6510, USA
*To whom correspondence should be addressed at 45 Center Drive, MSC 6510, Building 45, Rm5aS13B, Bethesda, MD 20892-6510, USA. Tel: +1 301 435 5895; Fax: +1 301 480 0109; Email: maglott{at}ncbi.nlm.nih.gov
Received September 15, 2006. Revised October 27, 2006. Accepted October 30, 2006.
Entrez Gene (www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene) is NCBI's database for gene-specific information. Entrez Gene includes records from genomes that have been completely sequenced, that have an active research community to contribute gene-specific information or that are scheduled for intense sequence analysis. The content of Entrez Gene represents the result of both curation and automated integration of data from NCBI's Reference Sequence project (RefSeq), from collaborating model organism databases and from other databases within NCBI. Records in Entrez Gene are assigned unique, stable and tracked integers as identifiers. The content (nomenclature, map location, gene products and their attributes, markers, phenotypes and links to citations, sequences, variation details, maps, expression, homologs, protein domains and external databases) is provided via interactive browsing through NCBI's Entrez system, via NCBI's Entrez programing utilities (E-Utilities), and for bulk transfer by ftp.
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|
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|
|
 |
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|
|
|
|
|
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|
|
|
|
|
|
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|
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|
|
|
|
 |
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|
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|
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|
|
|
|
|
|
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|
|
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|
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|
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|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
 |
|
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|
|
|
|
|
|
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|
|
|
|
 |
|
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|
|
|
|
 |
|
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|
|
|
|
 |
|
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|
|
|
|
|
|
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|
|
|
|
 |
|
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|
|
|
|
 |
|
 X. Wang miRDB: A microRNA target prediction and functional annotation database with a wiki interface RNA, June 1, 2008; 14(6): 1012 - 1017. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
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|
|
|
|
 |
|
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|
|
|
|
|
|
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|
|
|
|
|
|
V. M. Markowitz, E. Szeto, K. Palaniappan, Y. Grechkin, K. Chu, I-M. A. Chen, I. Dubchak, I. Anderson, A. Lykidis, K. Mavromatis, et al. The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions Nucleic Acids Res., January 11, 2008; 36(suppl_1): D528 - D533. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. P. Seiler, G. A. George, M. P. Happ, N. E. Bodycombe, H. A. Carrinski, S. Norton, S. Brudz, J. P. Sullivan, J. Muhlich, M. Serrano, et al. ChemBank: a small-molecule screening and cheminformatics resource database Nucleic Acids Res., January 11, 2008; 36(suppl_1): D351 - D359. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. Saunders, S. Lyon, M. Day, B. Riley, E. Chenette, and S. Subramaniam The Molecule Pages database Nucleic Acids Res., January 11, 2008; 36(suppl_1): D700 - D706. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
J. Sprague, L. Bayraktaroglu, Y. Bradford, T. Conlin, N. Dunn, D. Fashena, K. Frazer, M. Haendel, D. G. Howe, J. Knight, et al. The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes Nucleic Acids Res., January 11, 2008; 36(suppl_1): D768 - D772. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. C. Bryne, E. Valen, M.-H. E. Tang, T. Marstrand, O. Winther, I. da Piedade, A. Krogh, B. Lenhard, and A. Sandelin JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update Nucleic Acids Res., January 11, 2008; 36(suppl_1): D102 - D106. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
 |
|
 D. G Lemay, A. M Zivkovic, and J B. German Building the bridges to bioinformatics in nutrition research Am. J. Clinical Nutrition, November 1, 2007; 86(5): 1261 - 1269. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Hijikata, H. Kitamura, Y. Kimura, R. Yokoyama, Y. Aiba, Y. Bao, S. Fujita, K. Hase, S. Hori, Y. Ishii, et al. Construction of an open-access database that integrates cross-reference information from the transcriptome and proteome of immune cells Bioinformatics, November 1, 2007; 23(21): 2934 - 2941. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Spudich, X. M. Fernandez-Suarez, and E. Birney Genome browsing with Ensembl: a practical overview Brief Funct Genomic Proteomic, October 29, 2007; (2007) elm025v1. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
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|
|
|
|
 |
|
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|
|