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Nucleic Acids Research Advance Access originally published online on June 21, 2007
Nucleic Acids Research 2007 35(Web Server issue):W292-W296; doi:10.1093/nar/gkm344
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Nucleic Acids Research, 2007, Vol. 35, No. suppl_2 W292-W296
© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Articles

BIPASS: BioInformatics Pipeline Alternative Splicing Services

Zoé Lacroix1,*, Christophe Legendre1, Louiqa Raschid2 and Ben Snyder2

1Scientific Data Management Laboratory, Arizona State University, PO Box 875706, Tempe AZ 85287-5706 and 2Department of Computer Science, University of Maryland, College Park, MD 20742, USA

*To whom correspondence should be addressed. Tel: (480) 727 6935; Fax: (480) 965-8325; Email: Zoe.Lacroix{at}asu.edu

Received January 31, 2007. Revised April 14, 2007. Accepted April 22, 2007.

BioInformatics Pipeline Alternative Splicing Services (BIPASS) offer support to scientists interested in gathering information related to alternative splicing (AS) events. The service BIPAS–SpliceDB provides access to AS information that has been extracted a priori from various public databases and stored in a data warehouse. In contrast, the BIPAS–Align&Splice service allows scientists to submit their own sequences and genome to compute AS analysis results. BIPAS services offer various user-friendly ways to navigate through the results. AS results are organized at different conceptual levels (clusters and sequences), and are displayed in graphs or summarized in tables that can be downloaded in XML or text format. The two BIPAS services SpliceDB and Align&Splice are available online at http://bip.umiacs.umd.edu:8080/.

The authors wish it to be known that, in their opinion, all authors should be regarded as joint First Authors.


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