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Nucleic Acids Research Advance Access originally published online on June 6, 2007
Nucleic Acids Research 2007 35(Web Server issue):W354-W356; doi:10.1093/nar/gkm390
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Nucleic Acids Research, 2007, Vol. 35, No. suppl_2 W354-W356
© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Articles

DOMAC: an accurate, hybrid protein domain prediction server

Jianlin Cheng*

School of Electrical Engineering and Computer Science, University of Central Florida, Orlando, FL, 32816, USA

*To whom correspondence should be addressed. Tel: (407) 823-0230; Fax: (407) 823-5419; Email: jcheng{at}cs.ucf.edu

Received January 12, 2007. Revised March 28, 2007. Accepted May 1, 2007.

Protein domain prediction is important for protein structure prediction, structure determination, function annotation, mutagenesis analysis and protein engineering. Here we describe an accurate protein domain prediction server (DOMAC) combining both template-based and ab initio methods. The preliminary version of the server was ranked among the top domain prediction servers in the seventh edition of Critical Assessment of Techniques for Protein Structure Prediction (CASP7), 2006. DOMAC server and datasets are available at: http://www.bioinfotool.org/domac.html


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R. Bondugula, M. S. Lee, and A. Wallqvist
FIEFDom: a transparent domain boundary recognition system using a fuzzy mean operator
Nucleic Acids Res., February 1, 2009; 37(2): 452 - 462.
[Abstract] [Full Text] [PDF]


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