Nucleic Acids Research Advance Access originally published online on December 12, 2007
Nucleic Acids Research 2008 36(Database issue):D480-D484; doi:10.1093/nar/gkm882
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Nucleic Acids Research, 2008, Vol. 36, Database issue D480-D484
© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
This article appears in the following Nucleic Acids Research issue: Database issue [View the issue table of contents]
Articles |
KEGG for linking genomes to life and the environment
1Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, 2Human Genome Center, Institute of Medical Science, University of Tokyo, Minato-ku, Tokyo 108-8639 and 3Institute for Bioinformatics Research and Development, Japan Science and Technology Agency, Chiyoda-ku, Tokyo 102-8666, Japan
*To whom correspondence should be addressed. Tel: +81 774 38 3270; Fax: +81 774 38 3269; Email: kanehisa{at}kuicr.kyoto-u.ac.jp
Received September 13, 2007. Revised September 30, 2007. Accepted October 1, 2007.
KEGG (http://www.genome.jp/kegg/) is a database of biological systems that integrates genomic, chemical and systemic functional information. KEGG provides a reference knowledge base for linking genomes to life through the process of PATHWAY mapping, which is to map, for example, a genomic or transcriptomic content of genes to KEGG reference pathways to infer systemic behaviors of the cell or the organism. In addition, KEGG provides a reference knowledge base for linking genomes to the environment, such as for the analysis of drug-target relationships, through the process of BRITE mapping. KEGG BRITE is an ontology database representing functional hierarchies of various biological objects, including molecules, cells, organisms, diseases and drugs, as well as relationships among them. KEGG PATHWAY is now supplemented with a new global map of metabolic pathways, which is essentially a combined map of about 120 existing pathway maps. In addition, smaller pathway modules are defined and stored in KEGG MODULE that also contains other functional units and complexes. The KEGG resource is being expanded to suit the needs for practical applications. KEGG DRUG contains all approved drugs in the US and Japan, and KEGG DISEASE is a new database linking disease genes, pathways, drugs and diagnostic markers.
CiteULike 
Connotea 
Del.icio.us What's this?
This article has been cited by other articles:
|
|
 |
|
  A. Zerlotini, M. Heiges, H. Wang, R. L. V. Moraes, A. J. Dominitini, J. C. Ruiz, J. C. Kissinger, and G. Oliveira SchistoDB: a Schistosoma mansoni genome resource Nucleic Acids Res., October 8, 2008; (2008) gkn681v1. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. F. Schaefer, K. Anthony, S. Krupa, J. Buchoff, M. Day, T. Hannay, and K. H. Buetow PID: the Pathway Interaction Database Nucleic Acids Res., October 2, 2008; (2008) gkn653v1. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. Liu and M. Pop ARDB--Antibiotic Resistance Genes Database Nucleic Acids Res., October 2, 2008; (2008) gkn656v1. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C.-Y. Li, Q.-R. Liu, P.-W. Zhang, X.-M. Li, L. Wei, and G. R. Uhl OKCAM: an ontology-based, human-centered knowledgebase for cell adhesion molecules Nucleic Acids Res., September 12, 2008; (2008) gkn568v1. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. P. Davis, C. G. Murphy, C. A. Saraceni-Richards, M. C. Rosenstein, T. C. Wiegers, and C. J. Mattingly Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks Nucleic Acids Res., September 9, 2008; (2008) gkn580v1. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 Z. Hu, E. S. Snitkin, and C. DeLisi VisANT: an integrative framework for networks in systems biology Brief Bioinform, July 1, 2008; 9(4): 317 - 325. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. Fardet, R. Llorach, A. Orsoni, J.-F. Martin, E. Pujos-Guillot, C. Lapierre, and A. Scalbert Metabolomics Provide New Insight on the Metabolism of Dietary Phytochemicals in Rats J. Nutr., July 1, 2008; 138(7): 1282 - 1287. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Kim, T.-G. Kim, S. H. Jung, J.-R. Kim, T. Park, P. Heslop-Harrison, and K.-H. Cho Evolutionary design principles of modules that control cellular differentiation: consequences for hysteresis and multistationarity Bioinformatics, July 1, 2008; 24(13): 1516 - 1522. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Klein, S. Leupold, R. Munch, C. Pommerenke, T. Johl, U. Karst, L. Jansch, D. Jahn, and I. Retter ProdoNet: identification and visualization of prokaryotic gene regulatory and metabolic networks Nucleic Acids Res., July 1, 2008; 36(suppl_2): W460 - W464. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Reimand, L. Tooming, H. Peterson, P. Adler, and J. Vilo GraphWeb: mining heterogeneous biological networks for gene modules with functional significance Nucleic Acids Res., July 1, 2008; 36(suppl_2): W452 - W459. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Okuda, T. Yamada, M. Hamajima, M. Itoh, T. Katayama, P. Bork, S. Goto, and M. Kanehisa KEGG Atlas mapping for global analysis of metabolic pathways Nucleic Acids Res., July 1, 2008; 36(suppl_2): W423 - W426. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L.-C. Tranchevent, R. Barriot, S. Yu, S. Van Vooren, P. Van Loo, B. Coessens, B. De Moor, S. Aerts, and Y. Moreau ENDEAVOUR update: a web resource for gene prioritization in multiple species Nucleic Acids Res., July 1, 2008; 36(suppl_2): W377 - W384. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. E. Martinez-Guerrero, R. Ciria, C. Abreu-Goodger, G. Moreno-Hagelsieb, and E. Merino GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways Nucleic Acids Res., July 1, 2008; 36(suppl_2): W176 - W180. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Oehm, D. Gilbert, A. Tauch, J. Stoye, and A. Goesmann Comparative Pathway Analyzer--a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms Nucleic Acids Res., July 1, 2008; 36(suppl_2): W433 - W437. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. V. Nairn, W. S. York, K. Harris, E. M. Hall, J. M. Pierce, and K. W. Moremen Regulation of Glycan Structures in Animal Tissues: TRANSCRIPT PROFILING OF GLYCAN-RELATED GENES J. Biol. Chem., June 20, 2008; 283(25): 17298 - 17313. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Klammer, S. Roopra, and E. L. L. Sonnhammer jSquid: a Java applet for graphical on-line network exploration Bioinformatics, June 15, 2008; 24(12): 1467 - 1468. [Abstract] [Full Text] [PDF]
|
|