Skip Navigation


Nucleic Acids Research Advance Access originally published online on November 8, 2007
Nucleic Acids Research 2008 36(Database issue):D612-D617; doi:10.1093/nar/gkm975
This Article
Right arrow Full Text Freely available
Right arrow Print PDF (5934K) Freely available
Right arrow Screen PDF (770K) Freely available
Right arrowOA All Versions of this Article:
36/suppl_1/D612    most recent
gkm975v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Rogers, A.
Right arrow Articles by Sternberg, P. W.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Rogers, A.
Right arrow Articles by Sternberg, P. W.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Nucleic Acids Research, 2008, Vol. 36, Database issue D612-D617
© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

This article appears in the following Nucleic Acids Research issue: Database issue [View the issue table of contents]

Articles

WormBase 2007

Anthony Rogers1,*, Igor Antoshechkin2, Tamberlyn Bieri3, Darin Blasiar3, Carol Bastiani2, Payan Canaran4, Juancarlos Chan2, Wen J. Chen2, Paul Davis1, Jolene Fernandes2, Tristan J. Fiedler4, Michael Han1, Todd W. Harris4, Ranjana Kishore2, Raymond Lee2, Sheldon McKay4, Hans-Michael Müller2, Cecilia Nakamura2, Philip Ozersky3, Andrei Petcherski2, Gary Schindelman2, Erich M. Schwarz2, Will Spooner4, Mary Ann Tuli1, Kimberly Van Auken2, Daniel Wang2, Xiaodong Wang2, Gary Williams1, Karen Yook2, Richard Durbin1, Lincoln D. Stein4, John Spieth3 and Paul W. Sternberg2,5

1Sanger Institute, Wellcome Trust Genome Campus Hinxton, Cambridgeshire CB10 1SA, UK, 2Division of Biology 156-29, Pasadena, CA 91125, 3Genome Sequencing Center, Washington University School of Medicine St Louis, MO 63108, 4Cold Spring Harbor Laboratory, 1 Bungtown Road Cold Spring Harbor, NY 11724 and 5Howard Hughes Medical Institute, California Institute of Technology Pasadena, CA 91125, USA

*To whom correspondence should be addressed. Tel: +1223 496892; Fax: +1223 496802; Email: ar2{at}sanger.ac.uk

Received September 13, 2007. Revised October 18, 2007. Accepted October 18, 2007.

WormBase (www.wormbase.org) is the major publicly available database of information about Caenorhabditis elegans, an important system for basic biological and biomedical research. Derived from the initial ACeDB database of C. elegans genetic and sequence information, WormBase now includes the genomic, anatomical and functional information about C. elegans, other Caenorhabditis species and other nematodes. As such, it is a crucial resource not only for C. elegans biologists but the larger biomedical and bioinformatics communities. Coverage of core areas of C. elegans biology will allow the biomedical community to make full use of the results of intensive molecular genetic analysis and functional genomic studies of this organism. Improved search and display tools, wider cross-species comparisons and extended ontologies are some of the features that will help scientists extend their research and take advantage of other nematode species genome sequences.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 BioinformaticsHome page
G. F. Berriz, J. E. Beaver, C. Cenik, M. Tasan, and F. P. Roth
Next generation software for functional trend analysis
Bioinformatics, November 15, 2009; 25(22): 3043 - 3044.
[Abstract] [Full Text] [PDF]

Home page
 Mol Biol EvolHome page
R. Jovelin
Rapid Sequence Evolution of Transcription Factors Controlling Neuron Differentiation in Caenorhabditis
Mol. Biol. Evol., October 1, 2009; 26(10): 2373 - 2386.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
J. Duan, R. Li, D. Cheng, W. Fan, X. Zha, T. Cheng, Y. Wu, J. Wang, K. Mita, Z. Xiang, et al.
SilkDB v2.0: a platform for silkworm (Bombyx mori ) genome biology
Nucleic Acids Res., September 30, 2009; (2009) gkp801v1.
[Abstract] [Full Text] [PDF]

Home page
 Brief Funct Genomic ProteomicHome page
D. Fredman, P. G. Engstrom, and B. Lenhard
Web-based tools and approaches to study long-range gene regulation in Metazoa
Brief Funct Genomic Proteomic, July 15, 2009; (2009) elp023v1.
[Abstract] [Full Text] [PDF]

Home page
 Genome ResHome page
L. W. Hillier, V. Reinke, P. Green, M. Hirst, M. A. Marra, and R. H. Waterston
Massively parallel sequencing of the polyadenylated transcriptome of C. elegans
Genome Res., April 1, 2009; 19(4): 657 - 666.
[Abstract] [Full Text] [PDF]

Home page
 Brief BioinformHome page
M. Manning, A. Aggarwal, K. Gao, and G. Tucker-Kellogg
Scaling the walls of discovery: using semantic metadata for integrative problem solving
Brief Bioinform, March 1, 2009; 10(2): 164 - 176.
[Abstract] [Full Text] [PDF]

Home page
 J R Soc InterfaceHome page
G. A Reeves, D. Talavera, and J. M Thornton
Genome and proteome annotation: organization, interpretation and integration
J R Soc Interface, February 6, 2009; 6(31): 129 - 147.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
K. Morita, Y. Saito, K. Sato, K. Oka, K. Hotta, and Y. Sakakibara
Genome-wide searching with base-pairing kernel functions for noncoding RNAs: computational and expression analysis of snoRNA families in Caenorhabditis elegans
Nucleic Acids Res., February 1, 2009; 37(3): 999 - 1009.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
D. E. Newburger and M. L. Bulyk
UniPROBE: an online database of protein binding microarray data on protein-DNA interactions
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D77 - D82.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
J. Martin, S. Abubucker, T. Wylie, Y. Yin, Z. Wang, and M. Mitreva
Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D571 - D578.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
R. M. Kuhn, D. Karolchik, A. S. Zweig, T. Wang, K. E. Smith, K. R. Rosenbloom, B. Rhead, B. J. Raney, A. Pohl, M. Pheasant, et al.
The UCSC Genome Browser Database: update 2009
Nucleic Acids Res., January 1, 2009; 37(suppl_1): D755 - D761.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
G. A. Reeves, K. Eilbeck, M. Magrane, C. O'Donovan, L. Montecchi-Palazzi, M. A. Harris, S. Orchard, R. C. Jimenez, A. Prlic, T. J. P. Hubbard, et al.
The Protein Feature Ontology: a tool for the unification of protein feature annotations
Bioinformatics, December 1, 2008; 24(23): 2767 - 2772.
[Abstract] [Full Text] [PDF]

Home page
 RNAHome page
Y. Andachi
A novel biochemical method to identify target genes of individual microRNAs: Identification of a new Caenorhabditis elegans let-7 target
RNA, November 1, 2008; 14(11): 2440 - 2451.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
M. Pirooznia, T. Habib, E. J. Perkins, and Y. Deng
GOfetcher: a database with complex searching facility for gene ontology
Bioinformatics, November 1, 2008; 24(21): 2561 - 2563.
[Abstract] [Full Text] [PDF]

Home page
 Mol. Cell. ProteomicsHome page
T. F. Wu and D. S. Chu
Sperm Chromatin: Fertile Grounds for Proteomic Discovery of Clinical Tools
Mol. Cell. Proteomics, October 1, 2008; 7(10): 1876 - 1886.
[Abstract] [Full Text] [PDF]

Home page
 Brief BioinformHome page
Z. Hu, E. S. Snitkin, and C. DeLisi
VisANT: an integrative framework for networks in systems biology
Brief Bioinform, July 1, 2008; 9(4): 317 - 325.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.