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Nucleic Acids Research Advance Access originally published online on September 19, 2008
Nucleic Acids Research 2009 37(Database issue):D37-D40; doi:10.1093/nar/gkn597
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Nucleic Acids Research, 2009, Vol. 37, Database issue D37-D40
© 2008 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

This article appears in the following Nucleic Acids Research issue: Database issue [View the issue table of contents]

Articles

DiProDB: a database for dinucleotide properties

Maik Friedel1, Swetlana Nikolajewa2, Jürgen Sühnel1 and Thomas Wilhelm3,*

1Biocomputing Group, Leibniz Institute for Age Research - Fritz Lipmann Institute, Beutenbergstrasse 11, 07745 Jena, 2Department of Bioinformatics, Friedrich-Schiller-University Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany and 3Theoretical Systems Biology, Institute of Food Research, Norwich Research Park, Colney, Norwich NR4 7UA, UK

*To whom correspondence should be addressed. Tel: +44 1603 255313; Fax: +44 1603 255128; Email: thomas.wilhelm{at}bbsrc.ac.uk

Received August 1, 2008. Revised September 3, 2008. Accepted September 3, 2008.

DiProDB (http://diprodb.fli-leibniz.de) is a database of conformational and thermodynamic dinucleotide properties. It includes datasets both for DNA and RNA, as well as for single and double strands. The data have been shown to be important for understanding different aspects of nucleic acid structure and function, and they can also be used for encoding nucleic acid sequences. The database is intended to facilitate further applications of dinucleotide properties. A number of property datasets is highly correlated. Therefore, the database comes with a correlation analysis facility. Authors having determined new sets of dinucleotide property values are invited to submit these data to DiProDB.


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M. Friedel, S. Nikolajewa, J. Suhnel, and T. Wilhelm
DiProGB: the dinucleotide properties genome browser
Bioinformatics, October 1, 2009; 25(19): 2603 - 2604.
[Abstract] [Full Text] [PDF]


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