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Nucleic Acids Research Advance Access originally published online on October 8, 2008
Nucleic Acids Research 2009 37(Database issue):D49-D53; doi:10.1093/nar/gkn694
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Nucleic Acids Research, 2009, Vol. 37, Database issue D49-D53
© 2008 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

This article appears in the following Nucleic Acids Research issue: Database issue [View the issue table of contents]

Articles

MachiBase: a Drosophila melanogaster 5'-end mRNA transcription database

Budrul Ahsan1, Taro L. Saito1,2, Shin-ichi Hashimoto3, Keigo Muramatsu4, Manabu Tsuda4, Atsushi Sasaki1, Kouji Matsushima3, Toshiro Aigaki4 and Shinichi Morishita1,2,*

1Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa 277-0882, 2Japan Science and Technology Agency (JST), Tokyo 102-8666, 3Department of Molecular Preventive Medicine, School of Medicine, The University of Tokyo, Tokyo 113-0033 and 4Department of Biological Sciences, Tokyo Metropolitan University, Hachioji, Tokyo, Japan

*To whom correspondence should be addressed. Tel: +81 47 136 3984; Fax: +81 47 139 3977; Email: moris{at}k.u-tokyo.ac.jp, moris{at}cb.k.u-tokyo.ac.jp

Received August 15, 2008. Accepted September 25, 2008.

MachiBase (http://machibase.gi.k.u-tokyo.ac.jp/) provides a comprehensive and freely accessible resource regarding Drosophila melanogaster 5'-end mRNA transcription at different developmental states, supporting studies on the variabilities of promoter transcriptional activities and gene-expression profiles in the fruitfly. The data were generated in conjunction with the recently developed high-throughput genome sequencer Illumina/Solexa using a newly developed 5'-end mRNA collection method.

The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors.


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