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Nucleic Acids Research, 1978, Vol. 5, No. 12 4537-4546
© 1978

Articles

A method for sequencing restriction fragments with dideoxynucleoside triphosphates

Jan Maat* and Andrew J.H. Smith$

*Department of Physiology Chemistry, Leiden University Leiden, The Netherlands $MRC Laboratory of Molecular Biology Hills Road, Cambridge CB2 2QH,UK

Received October 26, 1978. A rapid enzymatic approach is described for the sequence analysis of a 5' terminally labelled restriction fragment. It involves limited nicking of the strands of the molecule throughout the sequence by pancreatic DNAase I. The 3' hydroxyl groups exposed by each nick are then used to prime chain extension by DNA polymerase I in four separate reactions. Each reaction uses one of the four chain terminating dideoxynucleoside triphosphates (ddNTPSs), together with the four deoxynucleoside triphosphates (dNTPs). In a single reaction all the 3' ends are terminated in positions of the same base, which is different for each of the four reactions. When the products of these reactions are resolved by gel electrophoresis according to size, a sequence can be deduced from the pattern of radioactive bands. Sequences can be determined onwards from 10–20 residues from the 5' labelled end. The length of sequence which can be determined is only limited by the resolution of the gel.


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