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Nucleic Acids Research, 1981, Vol. 9, No. 17 4403-4412
© 1981


CHEMISTRY

Sedimentation velocity of DNA in isokinetic sucrose gradients: calibration against molecular weight using fragments of defined length

Brent E. Korba, John B. Hays* and Sieghild Boehmer

Department of Chemistry, University of Maryland Baltimore County Catonsville, MD 21228, USA

*To whom correspondence should be addressed.

Received June 30, 1981. The relationship between sedimentation coefficient and molecular weight for DNA sedimenting in preformed alkaline and neutral sucrose gradients was determined using absolute molecular weight standards (restriction fragments of plasmid pBR322 and phage {lambda} DNA). The range of calibration for alkaline gradients was extended to small DNA fragments (652 base-pairs) for the first time. The exponent b in the equation S20° w = aMb was found to be 0.380 in neutral gradients and 0.410 in alkali. The latter value differs significantly from previous estimates. The gradients were isokinetic, and the distance sedimented was shown to be directly proportional to the sedimentation coefficient at all times.


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