Nucleic Acids Research Advance Access first published online on August 18, 2006
This version published online on September 14, 2006
Nucleic Acids Research, doi:10.1093/nar/gkl483
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
© 2006 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commerical use, distribution, and reproduction in any medium, provided the original work is properly cited.
Genomics |
Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis
1 Center for Ancient Genetics, Niels Bohr Institute and Biological Institutes, The University of Copenhagen, Juliane Maries vej 30 DK-2100 Copenhagen Ø, Denmark 2 Center for Comparative Genomics and Bioinformatics, Penn State University 310 Wartik Lab, University Park, PA 16802, USA 3 Bioinformatics Research Center, University of Aarhus Aarhus DK-8000, Denmark 4 Molecular Diagnostic Laboratory, Aarhus University Hospital DK-8200, Denmark 5 McMaster Ancient DNA Center, Department of Anthropology and Pathology & Molecular Medicine, McMaster University, Hamilton Ontario L82 4L9, Canada 6 School of Forest Resources, Penn State University 323 Forest Resources Building, University Park, PA16802, USA 7 Department of Plant Biology, University of Georgia Athens, Georgia 30602-7271
*To whom correspondence should be addressed. Tel: +45 35 32 05 87; Fax: +45 35 36 53 57; Email: mtpgilbert@gmail.com
Received May 25, 2006. Revised June 21, 2006. Accepted June 23, 2006.
| The first 10% of the full text of this article appears below. |
This
![]()
CiteULike
Connotea
Del.icio.us What's this?
This article has been cited by other articles:
![]() |
P. Brotherton, J. J. Sanchez, A. Cooper, and P. Endicott Preferential access to genetic information from endogenous hominin ancient DNA and accurate quantitative SNP-typing via SPEX Nucleic Acids Res., October 27, 2009; (2009) gkp897v1. [Abstract] [Full Text] [PDF] |
||||
![]() |
W. Miller, D. I. Drautz, J. E. Janecka, A. M. Lesk, A. Ratan, L. P. Tomsho, M. Packard, Y. Zhang, L. R. McClellan, J. Qi, et al. The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus) Genome Res., February 1, 2009; 19(2): 213 - 220. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. T. P. Gilbert, W. Miller, and S. C. Schuster Response to Comment on "Whole-Genome Shotgun Sequencing of Mitochondria from Ancient Hair Shafts" Science, November 7, 2008; 322(5903): 857b - 857b. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. Axelsson, E. Willerslev, M. T. P. Gilbert, and R. Nielsen The Effect of Ancient DNA Damage on Inferences of Demographic Histories Mol. Biol. Evol., October 1, 2008; 25(10): 2181 - 2187. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. Suzuki, T. Juelich, H. Lim, T. Ishida, T. Watanebe, D. A. Cooper, S. Rao, and A. D. Kelleher Closed Chromatin Architecture Is Induced by an RNA Duplex Targeting the HIV-1 Promoter Region J. Biol. Chem., August 22, 2008; 283(34): 23353 - 23363. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. J. Blow, T. Zhang, T. Woyke, C. F. Speller, A. Krivoshapkin, D. Y. Yang, A. Derevianko, and E. M. Rubin Identification of ancient remains through genomic sequencing Genome Res., August 1, 2008; 18(8): 1347 - 1353. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. M. Mateiu and B. H. Rannala Bayesian Inference of Errors in Ancient DNA Caused by Postmortem Degradation Mol. Biol. Evol., July 1, 2008; 25(7): 1503 - 1511. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. T. P. Gilbert, D. I. Drautz, A. M. Lesk, S. Y. W. Ho, J. Qi, A. Ratan, C.-H. Hsu, A. Sher, L. Dalen, A. Gotherstrom, et al. Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes PNAS, June 17, 2008; 105(24): 8327 - 8332. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. Horvath, D. A. Romero, A.-C. Coute-Monvoisin, M. Richards, H. Deveau, S. Moineau, P. Boyaval, C. Fremaux, and R. Barrangou Diversity, Activity, and Evolution of CRISPR Loci in Streptococcus thermophilus J. Bacteriol., February 15, 2008; 190(4): 1401 - 1412. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. W. A. van Grinsven, S. Rosnowsky, S. W. H. van Weelden, S. Putz, M. van der Giezen, W. Martin, J. J. van Hellemond, A. G. M. Tielens, and K. Henze Acetate:Succinate CoA-transferase in the Hydrogenosomes of Trichomonas vaginalis: IDENTIFICATION AND CHARACTERIZATION J. Biol. Chem., January 18, 2008; 283(3): 1411 - 1418. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. T. P. Gilbert, L. P. Tomsho, S. Rendulic, M. Packard, D. I. Drautz, A. Sher, A. Tikhonov, L. Dalen, T. Kuznetsova, P. Kosintsev, et al. Whole-Genome Shotgun Sequencing of Mitochondria from Ancient Hair Shafts Science, September 28, 2007; 317(5846): 1927 - 1930. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. Brotherton, P. Endicott, J. J. Sanchez, M. Beaumont, R. Barnett, J. Austin, and A. Cooper Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause of post mortem miscoding lesions Nucleic Acids Res., September 27, 2007; 35(17): 5717 - 5728. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. W. Briggs, U. Stenzel, P. L. F. Johnson, R. E. Green, J. Kelso, K. Prufer, M. Meyer, J. Krause, M. T. Ronan, M. Lachmann, et al. Patterns of damage in genomic DNA sequences from a Neandertal PNAS, September 11, 2007; 104(37): 14616 - 14621. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Y. W. Ho, T. H. Heupink, A. Rambaut, and B. Shapiro Bayesian Estimation of Sequence Damage in Ancient DNA Mol. Biol. Evol., June 1, 2007; 24(6): 1416 - 1422. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Burger, M. Kirchner, B. Bramanti, W. Haak, and M. G. Thomas Absence of the lactase-persistence-associated allele in early Neolithic Europeans PNAS, March 6, 2007; 104(10): 3736 - 3741. [Abstract] [Full Text] [PDF] |
||||






