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Nucleic Acids Research Advance Access published online on November 15, 2006
Nucleic Acids Research, doi:10.1093/nar/gkl908
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© 2006 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Database Issue

DDBJ working on evaluation and classification of bacterial genes in INSDC

Hideaki Sugawara, Takashi Abe, Takashi Gojobori and Yoshio Tateno*

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems Yata, Mishima 411-8540, Japan

*To whom correspondence should be addressed. Tel: +81 55 981 6857; Fax: +81 55 981 6858; Email: ytateno{at}genes.nig.ac.jp

Received September 4, 2006. Revised October 10, 2006. Accepted October 13, 2006.

DNA Data Bank of Japan (DDBJ) (http://www.ddbj.nig.ac.jp) newly collected and released 12 927 184 entries or 13 787 688 598 bases in the period from July 2005 to June 2006. The released data contain honeybee expressed sequence tags (ESTs), re-examined and re-annotated complete genome data of Escherichia coli K-12 W3110, medaka WGS and human MGA. We also systematically evaluated and classified the genes in the complete bacterial genomes submitted to the International Nucleotide Sequence Database Collaboration (INSDC, http://insdc.org) that is composed of DDBJ, EMBL Bank and GenBank. The examination and classification selected 557 000 genes as reliable ones among all the bacterial genes predicted by us.

The authors wish it to be known that, in their opinion, the first four authors should be regarded as joint First Authors


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H. Sugawara, O. Ogasawara, K. Okubo, T. Gojobori, and Y. Tateno
DDBJ with new system and face
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D22 - D24.
[Abstract] [Full Text] [PDF]


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