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Nucleic Acids Research Advance Access published online on April 10, 2007
Nucleic Acids Research, doi:10.1093/nar/gkm194
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© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Methods Online

An exonuclease I hydrolysis assay for evaluating G-quadruplex stabilization by small molecules

Yuan Yao1, Quan Wang1, Yu-hua Hao2 and Zheng Tan1,2,*

1Laboratory of Biochemistry and Biophysics, College of Life Sciences, Wuhan University, Wuhan 430072, People's Republic of China and 2State Key Laboratory of Biomembrane and Membrane Biotechnology, Institute of Zoology, Chinese Academy of Sciences, Beijing 100080, People's Republic of China

*To whom correspondence should be addressed. Tel: +86 (10) 6480-7259; Fax: +86 (10) 6480-7099; Email: tanclswu{at}public.wh.hb.cn, z.tan{at}ioz.ac.cn

Received January 9, 2007. Revised March 18, 2007. Accepted March 20, 2007.

Telomere length homeostasis is a prerequisite for the generation and growth of cancer. In >85% cancer cells, telomere length is maintained by telomerase that add telomere repeats to the end of telomere DNA. Because the G-rich strand of telomere DNA can fold into G-quadruplex that inhibits telomerase activity, stabilizing telomere quadruplex by small molecules is emerging as a potential therapeutic strategy against cancer. In these applications, the specificity of small molecules toward quadruplex over other forms of DNA is an important property to ensure no processes other than telomere elongation are interrupted. The evaluating assays currently available more or less have difficulty identifying or distinguishing quadruplex-irrelevant effect from quadruplex stabilization. Here, we describe an exonuclease I hydrolysis assay that evaluates quadruplex stabilization by DNA-interacting compounds, discriminates inhibitory effect from different sources and helps determine the optimal compound concentration.

The authors wish it to be known that, in their opinion, the first two authors should be regarded as joint First Authors.


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K.-w. Zheng, Z. Chen, Y.-h. Hao, and Z. Tan
Molecular crowding creates an essential environment for the formation of stable G-quadruplexes in long double-stranded DNA
Nucleic Acids Res., October 25, 2009; (2009) gkp898v1.
[Abstract] [Full Text] [PDF]


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