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Nucleic Acids Research Advance Access published online on June 1, 2007
Nucleic Acids Research, doi:10.1093/nar/gkm352
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© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Web Server Issue

MyHits: improvements to an interactive resource for analyzing protein sequences

Marco Pagni1,*, Vassilios Ioannidis1,2, Lorenzo Cerutti3, Monique Zahn-Zabal4, C. Victor Jongeneel1,2,4, Jörg Hau5, Olivier Martin1, Dmitri Kuznetsov1 and Laurent Falquet2

1Swiss Institute of Bioinformatics (SIB), Vital-IT Group, UNIL-Génopode, CH-1015 Lausanne, 2Swiss Institute of Bioinformatics (SIB), EMBnet Group, UNIL-Génopode, CH-1015 Lausanne, 3Swiss Institute of Bioinformatics (SIB), Swiss-Prot Group, UNIGE-CMU, CH-1211 Genève 4, 4Ludwig Institute for Cancer Research, UNIL-Génopode, CH-1015 Lausanne and 5Nestlé Research Center, Department of BioAnalytical Science, PO Box 44, CH-1000 Lausanne 26, Switzerland

*To whom correspondence should be addressed. Tel: +41-21-692-40-38; Fax: +41-21-692-40-65; Email: marco.pagni{at}isb-sib.ch

Received January 31, 2007. Revised April 23, 2007. Accepted April 23, 2007.

The MyHits web site (http://myhits.isb-sib.ch) is an integrated service dedicated to the analysis of protein sequences. Since its first description in 2004, both the user interface and the back end of the server were improved. A number of tools (e.g. MAFFT, Jacop, Dotlet, Jalview, ESTScan) were added or updated to improve the usability of the service. The MySQL schema and its associated API were revamped and the database engine (HitKeeper) was separated from the web interface. This paper summarizes the current status of the server, with an emphasis on the new services.


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