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Nucleic Acids Research Advance Access published online on October 11, 2007
Nucleic Acids Research, doi:10.1093/nar/gkm791
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© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Database Issue

ChEBI: a database and ontology for chemical entities of biological interest

Kirill Degtyarenko1,*, Paula de Matos1, Marcus Ennis1, Janna Hastings1, Martin Zbinden1, Alan McNaught1, Rafael Alcántara1, Michael Darsow1, Mickaël Guedj1 and Michael Ashburner2

1European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD and 2Department of Genetics, University of Cambridge, Cambridge CB2 3EH, UK

* To whom correspondence should be addressed. Tel: +44 12 23 49 46 59; Fax: +44 12 23 49 44 68; Email: kirill{at}ebi.ac.uk

Received August 13, 2007. Revised September 14, 2007. Accepted September 17, 2007.

Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds. The molecular entities in question are either natural products or synthetic products used to intervene in the processes of living organisms. Genome-encoded macromolecules (nucleic acids, proteins and peptides derived from proteins by cleavage) are not as a rule included in ChEBI. In addition to molecular entities, ChEBI contains groups (parts of molecular entities) and classes of entities. ChEBI includes an ontological classification, whereby the relationships between molecular entities or classes of entities and their parents and/or children are specified. ChEBI is available online at http://www.ebi.ac.uk/chebi/


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