Skip Navigation



Nucleic Acids Research Advance Access published online on October 18, 2007
Nucleic Acids Research, doi:10.1093/nar/gkm842
This Article
Right arrow Full Text Freely available
Right arrow Print PDF (2236K) Freely available
Right arrow Screen PDF (323K) Freely available
Right arrowOA All Versions of this Article:
36/suppl_1/D392    most recent
gkm842v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Commercial Re-use Guidelines
for Open Access NAR Content
Google Scholar
Right arrow Articles by Bindewald, E.
Right arrow Articles by Shapiro, B. A.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Bindewald, E.
Right arrow Articles by Shapiro, B. A.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© 2007
The Author(s) This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Database Issue

RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign

Eckart Bindewald1, Robert Hayes2, Yaroslava G. Yingling2, Wojciech Kasprzak1 and Bruce A. Shapiro2,*

1Basic Research Program, SAIC-Frederick and 2Center for Cancer Research Nanobiology Program, NCI-Frederick, Frederick, MD 21702, USA

*To whom correspondence should be addressed. Tel: 301 846 5536; Fax: 301 846 5598; Email: bshapiro{at}ncifcrf.gov

Received August 14, 2007. Revised September 21, 2007. Accepted September 25, 2007.

We developed a database called RNAJunction that contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop–loop interactions. Our database provides a user-friendly way of searching structural elements by PDB code, structural classification, sequence, keyword or inter-helix angles. In addition, the structural data was subjected to energy minimization. This database is useful for analyzing RNA structures as well as for designing novel RNA structures on a nanoscale. The database can be accessed at: http://rnajunction.abcc.ncifcrf.gov/


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 RNAHome page
V. B. Chu, J. Lipfert, Y. Bai, V. S. Pande, S. Doniach, and D. Herschlag
Do conformational biases of simple helical junctions influence RNA folding stability and specificity?
RNA, December 1, 2009; 15(12): 2195 - 2205.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
C. Schudoma, P. May, V. Nikiforova, and D. Walther
Sequence-structure relationships in RNA loops: establishing the basis for loop homology modeling
Nucleic Acids Res., November 18, 2009; (2009) gkp1010v1.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.