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Nucleic Acids Research Advance Access published online on October 11, 2007
Nucleic Acids Research, doi:10.1093/nar/gkm869
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© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Database Issue

IMG/M: a data management and analysis system for metagenomes

Victor M. Markowitz1, Natalia N. Ivanova4, Ernest Szeto1, Krishna Palaniappan1, Ken Chu1, Daniel Dalevi1, I-Min A. Chen1, Yuri Grechkin1, Inna Dubchak2, Iain Anderson4, Athanasios Lykidis4, Konstantinos Mavromatis4, Philip Hugenholtz3 and Nikos C. Kyrpides4,*

1Biological Data Management and Technology Center, 2Genomics Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, 3Department of Energy Joint Genome Institute, Microbial Ecology Program and 4Department of Energy Joint Genome Institute, Genome Biology Program, 2800 Mitchell Drive, Walnut Creek, USA

* To whom correspondence should be addressed. Tel: ±925 296 5718; Fax: ±925 296 5666; Email: nckyrpides{at}lbl.gov

Received August 10, 2007. Revised September 22, 2007. Accepted September 24, 2007.

IMG/M is a data management and analysis system for microbial community genomes (metagenomes) hosted at the Department of Energy's (DOE) Joint Genome Institute (JGI). IMG/M consists of metagenome data integrated with isolate microbial genomes from the Integrated Microbial Genomes (IMG) system. IMG/M provides IMG's comparative data analysis tools extended to handle metagenome data, together with metagenome-specific analysis tools. IMG/M is available at http://img.jgi.doe.gov/m


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D. Dalevi, N. N. Ivanova, K. Mavromatis, S. D. Hooper, E. Szeto, P. Hugenholtz, N. C. Kyrpides, and V. M. Markowitz
Annotation of metagenome short reads using proxygenes
Bioinformatics, August 15, 2008; 24(16): i7 - i13.
[Abstract] [PDF]


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