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Nucleic Acids Research Advance Access published online on December 20, 2007
Nucleic Acids Research, doi:10.1093/nar/gkm886
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© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Database Issue

AlterORF: a database of alternate open reading frames

Inti Pedroso1, Gustavo Rivera1, Felipe Lazo2, Max Chacón2, Francisco Ossandón1, Felipe A. Veloso1 and David S. Holmes1,*

1Center for Bioinformatics and Genome Biology, Life Science Foundation, MIFAB and Andrés Bello University, Santiago, Chile and 2Department of Informatics, University of Santiago, Santiago, Chile

*To whom correspondence should be addressed. Tel: +56 2 239 8969; Fax: +56 2 237 2259; Email: dsholmes2000{at}yahoo.com

Received August 17, 2007. Revised October 2, 2007. Accepted October 2, 2007.

AlterORF is a searchable database that contains information regarding alternate open reading frames (ORFs) for over 1.5 million genes in 481 prokaryotic genomes. The objective of the database is to provide a platform for improving genome annotation and to serve as an aid for the identification of prokaryotic genes that potentially encode proteins in more than one reading frame. The AlterORF Database can be accessed through a web interface at www.alterorf.cl


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