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Nucleic Acids Research Advance Access published online on November 4, 2007
Nucleic Acids Research, doi:10.1093/nar/gkm957
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© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Database Issue

BioMagResBank

Eldon L. Ulrich1,*, Hideo Akutsu2, Jurgen F. Doreleijers1, Yoko Harano2, Yannis E. Ioannidis3, Jundong Lin1, Miron Livny4, Steve Mading1, Dimitri Maziuk1, Zachary Miller4, Eiichi Nakatani2, Christopher F. Schulte1, David E. Tolmie1, R. Kent Wenger4, Hongyang Yao1 and John L. Markley1

1Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA, 2Institute for Protein Research, Osaka University, Osaka, Japan, 3The Department of Informatics, University of Athens, Athens, Greece and 4Department of Computer Sciences, University of Wisconsin-Madison, Madison, WI 53706, USA

*To whom correspondence should be addressed. Tel: +1 608 265 5741; Fax: +1 608 262 3453; Email: elu{at}bmrb.wisc.edu

Received September 14, 2007. Revised October 15, 2007. Accepted October 16, 2007.

The BioMagResBank (BMRB: www.bmrb.wisc.edu) is a repository for experimental and derived data gathered from nuclear magnetic resonance (NMR) spectroscopic studies of biological molecules. BMRB is a partner in the Worldwide Protein Data Bank (wwPDB). The BMRB archive consists of four main data depositories: (i) quantitative NMR spectral parameters for proteins, peptides, nucleic acids, carbohydrates and ligands or cofactors (assigned chemical shifts, coupling constants and peak lists) and derived data (relaxation parameters, residual dipolar couplings, hydrogen exchange rates, pKa values, etc.), (ii) databases for NMR restraints processed from original author depositions available from the Protein Data Bank, (iii) time-domain (raw) spectral data from NMR experiments used to assign spectral resonances and determine the structures of biological macromolecules and (iv) a database of one- and two-dimensional 1H and 13C one- and two-dimensional NMR spectra for over 250 metabolites. The BMRB website provides free access to all of these data. BMRB has tools for querying the archive and retrieving information and an ftp site (ftp.bmrb.wisc.edu) where data in the archive can be downloaded in bulk. Two BMRB mirror sites exist: one at the PDBj, Protein Research Institute, Osaka University, Osaka, Japan (bmrb.protein.osaka-u.ac.jp) and the other at CERM, University of Florence, Florence, Italy (bmrb.postgenomicnmr.net/). The site at Osaka also accepts and processes data depositions.


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