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Nucleic Acids Research Advance Access published online on May 7, 2008
Nucleic Acids Research, doi:10.1093/nar/gkn213
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© 2008 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data

Alexander E. Ivliev1,2, Peter A. C. 't Hoen1,*, Michel P. Villerius1, Johan T. den Dunnen1 and Bernd W. Brandt3,4

1Center for Human and Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands, 2Department of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, Russia, 3Centre for Integrative Bioinformatics (IBIVU), VU University Amsterdam, Amsterdam and 4Department of Medical Microbiology, Leiden University Medical Center, Leiden, The Netherlands

*To whom correspondence should be addressed. Tel: +31 71 5269421; Fax: +31 71 5268285; Email: p.a.c.hoen{at}lumc.nl

Received January 28, 2008. Revised April 2, 2008. Accepted April 9, 2008.

The major public microarray repositories Gene Expression Omnibus and ArrayExpress are growing rapidly. This enables meta-analysis studies, in which expression data from multiple individual studies are combined. To facilitate these types of studies, we developed Microarray Retriever for searching and retrieval of data from GEO and ArrayExpress. The tool allows access to the two repositories simultaneously, to search in the repositories using complex queries, to retrieve microarray data for published articles and to download data in one structured archive. The tool is available on the web at: http://www.lgtc.nl/MaRe/


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