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Nucleic Acids Research Advance Access published online on May 29, 2008
Nucleic Acids Research, doi:10.1093/nar/gkn330
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© 2008 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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GeConT 2: gene context analysis for orthologous proteins, conserved domains and metabolic pathways

C. E. Martinez-Guerrero1, R. Ciria1, C. Abreu-Goodger2, G. Moreno-Hagelsieb3 and E. Merino1,*

1Departmento de Microbiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Morelos 62210, México, 2The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK and 3Department of Biology, Wilfrid Laurier University, Waterloo, ON, N2L 3C5, Canada.

*To whom correspondence should be addressed. Tel: +52 777 3291648; Fax: +52 777 3172388; Email: merino{at}ibt.unam.mx

Received January 31, 2008. Revised April 26, 2008. Accepted May 8, 2008.

The Gene Context Tool (GeConT) allows users to visualize the genomic context of a gene or a group of genes and their orthologous relationships within fully sequenced bacterial genomes. The new version of the server incorporates information from the COG, Pfam and KEGG databases, allowing users to have an integrated graphical representation of the function of genes at multiple levels, their phylogenetic distribution and their genomic context. The sequence of any of the genes can be easily retrieved, as well as the 5' or 3' regulatory regions, greatly facilitating further types of analysis. GeConT 2 is available at: http://bioinfo.ibt.unam.mx/gecont.


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