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Nucleic Acids Research Advance Access published online on October 16, 2008
Nucleic Acids Research, doi:10.1093/nar/gkn724
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© 2008 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

Database Issue

DDBJ dealing with mass data produced by the second generation sequencer

Hideaki Sugawara, Kazuho Ikeo, Satoshi Fukuchi, Takashi Gojobori and Yoshio Tateno*

Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan

*To whom correspondence should be addressed. Tel: +81 55 981 6857; Fax: +81 55 981 6858; Email: ytateno{at}genes.nig.ac.jp

Received September 18, 2008. Accepted September 30, 2008.

DNA Data Bank of Japan (DDBJ) (http://www.ddbj.nig.ac.jp) collected and released 2 368 110 entries or 1 415 106 598 bases in the period from July 2007 to June 2008. The releases in this period include genome scale data of Bombyx mori, Oryzas latipes, Drosophila and Lotus japonicus. In addition, from this year we collected and released trace archive data in collaboration with National Center for Biotechnology Information (NCBI). The first release contains those of O. latipes and bacterial meta genomes in human gut. To cope with the current progress of sequencing technology, we also accepted and released more than 100 million of short reads of parasitic protozoa and their hosts that were produced by using a Solexa sequencer.


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