Nucleic Acids Research

MINICOMPUTERS:

Hugo M. Martinez

An RNA folding rule
Nucl. Acids Res. 1984 12: 323-334; doi:10.1093/nar/12.1Part1.323 [Abstract] [Print PDF] [Request Permissions]  

Kenji Yamamoto, Yoshihiro Kitamura, and Hiroshi Yoshikura

Computation of statistical secondary structure of nucleic acids
Nucl. Acids Res. 1984 12: 335-346; doi:10.1093/nar/12.1Part1.335 [Abstract] [Print PDF] [Request Permissions]  

Gary J. Quigley, Lee Gehrke, David A. Roth, and Philip E. Auron

Computer-aided nucleic acid secondary structure modeling incorporating enzymatic digestion data
Nucl. Acids Res. 1984 12: 347-366; doi:10.1093/nar/12.1Part1.347 [Abstract] [Print PDF] [Request Permissions]  

Terry W. Stone and Kathleen N. Potter

A DNA analysis program designed for computer novices working in an industrial-research environment
Nucl. Acids Res. 1984 12: 367-378; doi:10.1093/nar/12.1Part1.367 [Abstract] [Print PDF] [Request Permissions]  

C. Keller, M. Corcoran, and R.J. Roberts

Computer programs for handling nucleic acid sequences
Nucl. Acids Res. 1984 12: 379-386; doi:10.1093/nar/12.1Part1.379 [Abstract] [Print PDF] [Request Permissions]  

John Devereux, Paul Haeberli, and Oliver Smithies

A comprehensive set of sequence analysis programs for the VAX
Nucl. Acids Res. 1984 12: 387-395; doi:10.1093/nar/12.1Part1.387 [Abstract] [Print PDF] [Request Permissions]  

Jean-Michel Claverie

A common philosophy and FORTRAN 77 software package for implementing and searching sequence databases
Nucl. Acids Res. 1984 12: 397-407; doi:10.1093/nar/12.1Part1.397 [Abstract] [Print PDF] [Request Permissions]  

A. H. Reisner and C. A. Bucholtz

Utilization of sequence libraries on a 16-bit mini computer with particular reference to high speed searching
Nucl. Acids Res. 1984 12: 409-416; doi:10.1093/nar/12.1Part1.409 [Abstract] [Print PDF] [Request Permissions]  

Minoru Kanethisa, Petr Klein, Peter Greif, and Charles DeLisi

Computer analysis and structure prediction of nucleic acid and proteins
Nucl. Acids Res. 1984 12: 417-428; doi:10.1093/nar/12.1Part1.417 [Abstract] [Print PDF] [Request Permissions]  

MAIN-FRAME COMPUTERS:

Scott Meyers and Peter Friedland

Knowledge-based simulation of genetic regulation in bacteriophage lambda
Nucl. Acids Res. 1984 12: 1-9; doi:10.1093/nar/12.1Part1.1 [Abstract] [Print PDF] [Request Permissions]  

René Bach, Yumi Iwasaki, and Peter Friedland

Intelligent computational assistance for experiment design
Nucl. Acids Res. 1984 12: 11-29; doi:10.1093/nar/12.1Part1.11 [Abstract] [Print PDF] [Request Permissions]  

Catherine Papanicolaou, Manolo Gouy, and Jacques Ninio

An energy model that predicts the correct folding of both the tRNA and the 5S RNA molecules
Nucl. Acids Res. 1984 12: 31-44; doi:10.1093/nar/12.1Part1.31 [Abstract] [Print PDF] [Request Permissions]  

A. B. Jacobson, L. Good, J. Simonetti, and M. Zuker

Some simple computational methods to improve the folding of large RNAs
Nucl. Acids Res. 1984 12: 45-52; doi:10.1093/nar/12.1Part1.45 [Abstract] [Print PDF] [Request Permissions]  

Eliahu Comay, Ruth Nussinov, and Oded Comay

An accelerated algorithm for calculating the secondary structure of single stranded RNAs
Nucl. Acids Res. 1984 12: 53-66; doi:10.1093/nar/12.1Part1.53 [Abstract] [Print PDF] [Request Permissions]  

P. Hogeweg and B. Hesper

Energy directed folding of RNA sequences
Nucl. Acids Res. 1984 12: 67-74; doi:10.1093/nar/12.1Part1.67 [Abstract] [Print PDF] [Request Permissions]  

Bruce A. Shapiro, Jacob Maizel, Lewis E. Lipkin, Kathleen Currey, and Carol Whitney

Generating non-overlapping displays of nucleic acid secondary structure
Nucl. Acids Res. 1984 12: 75-88; doi:10.1093/nar/12.1Part1.75 [Abstract] [Print PDF] [Request Permissions]  

Satoru Kuhara, Fumihiro Matsuo, Syoichi Futamura, Atsushi Fujita, Takeshi Shinohara, Toshihisa Takagi, and Yoshiyuki Sakaki

GENAS: a database system for nucleic add sequence analysis
Nucl. Acids Res. 1984 12: 89-99; doi:10.1093/nar/12.1Part1.89 [Abstract] [Print PDF] [Request Permissions]  

Katsumi Isono

A computer program package for storing and retrieving DNA/RNA and protein sequence data
Nucl. Acids Res. 1984 12: 101-112; doi:10.1093/nar/12.1Part1.101 [Abstract] [Print PDF] [Request Permissions]  

Manfred Kröger and Anneliese Kröger-Block

Extension of a flexible computer program for handing DNA sequence data
Nucl. Acids Res. 1984 12: 113-120; doi:10.1093/nar/12.1Part1.113 [Abstract] [Print PDF] [Request Permissions]  

M. Gouy, F. Milleret, C. Mugnier, M. Jacobzone, and C. Gautier

ACNUC: a nucleic acid sequence data base and analysis system
Nucl. Acids Res. 1984 12: 121-127; doi:10.1093/nar/12.1Part1.121 [Abstract] [Print PDF] [Request Permissions]  

Thomas D. Schneider, Gary D. Stormo, Matthew A. Yarus, and Larry Gold

Delila system tools
Nucl. Acids Res. 1984 12: 129-140; doi:10.1093/nar/12.1Part1.129 [Abstract] [Print PDF] [Request Permissions]  

James M. Sobieski, Kwang Nan Chen, Jay C. Filiatreau, Mark H. Pickett, and George E. Fox

16S rRNA oligonucleotide catalog data base
Nucl. Acids Res. 1984 12: 141-148; doi:10.1093/nar/12.1Part1.141 [Abstract] [Print PDF] [Request Permissions]  

Minoru Kanehisa, James W. Fickett, and Walter B. Goad

A relational database system for the maintenance and verification of the Los Alamos sequence library
Nucl. Acids Res. 1984 12: 149-158; doi:10.1093/nar/12.1Part1.149 [Abstract] [Print PDF] [Request Permissions]  

Verner Paetkau

A new rule for analyzing homologous coding sequences in DNA
Nucl. Acids Res. 1984 12: 159-173; doi:10.1093/nar/12.1Part1.159 [Abstract] [Print PDF] [Request Permissions]  

James W. Fickett

Fast optimal alignment
Nucl. Acids Res. 1984 12: 175-179; doi:10.1093/nar/12.1Part1.175 [Abstract] [Print PDF] [Request Permissions]  

J. F. Collins and A. F. W. Coulson

Applications of parallel processing algorithms for DNA sequence analysis
Nucl. Acids Res. 1984 12: 181-192; doi:10.1093/nar/12.1Part1.181 [Abstract] [Print PDF] [Request Permissions]  

Manfred Kröger and Anneliese KrÖger-Block

Simplified computer programs for search of homology within nucteotide sequences
Nucl. Acids Res. 1984 12: 193-201; doi:10.1093/nar/12.1Part1.193 [Abstract] [Print PDF] [Request Permissions]  

Minoru Kanehisa

Use of statistical criteria for screening potential homologies in nucleic acid sequences
Nucl. Acids Res. 1984 12: 203-213; doi:10.1093/nar/12.1Part1.203 [Abstract] [Print PDF] [Request Permissions]  

D. J. Lipman, W. J. Wilbur, T.F. Smith, and M.S. Waterman

On the statistical significance of nucleic add similarities
Nucl. Acids Res. 1984 12: 215-226; doi:10.1093/nar/12.1Part1.215 [Abstract] [Print PDF] [Request Permissions]  

Gábor Poiner, László Dorgai, and László Orosz

PMAP, PMAPS: DNA physical map constructing programs
Nucl. Acids Res. 1984 12: 227-236; doi:10.1093/nar/12.1Part1.227 [Abstract] [Print PDF] [Request Permissions]  

Michael S. Waterman, Temple F. Smith, and Harold L. Katcher

Algorithms for restriction map comparisons
Nucl. Acids Res. 1984 12: 237-242; doi:10.1093/nar/12.1Part1.237 [Abstract] [Print PDF] [Request Permissions]  

Jiri Novotny and Charles Auffray

A program for prediction of protein secondary structure from nucleotide sequence data: application to histocompatibility antigens
Nucl. Acids Res. 1984 12: 243-255; doi:10.1093/nar/12.1Part1.243 [Abstract] [Print PDF] [Request Permissions]  

Anne Salemme and Anthony V. Furano

A convenient method for locating sets of related short sequences in DNA sequences of any length
Nucl. Acids Res. 1984 12: 257-262; doi:10.1093/nar/12.1Part1.257 [Abstract] [Print PDF] [Request Permissions]  

R. M. Abarbanel, P. R. Wieneke, E. Mansfield, D. A. Jaffe, and D. L. Brutlag

Rapid searches for complex patterns in biological molecules
Nucl. Acids Res. 1984 12: 263-280; doi:10.1093/nar/12.1Part1.263 [Abstract] [Print PDF] [Request Permissions]  

G. Pierno, N. Barni, M. Candurro, M. Cipollaro, A. Franzè, L. Juliano, M. F. Macchiato, G. Mastrocinque, C. Moscatelli, V. Scarlato, A. Tramontano, and A. Cascino

Computer programs for the characterization of protein coding genes
Nucl. Acids Res. 1984 12: 281-285; doi:10.1093/nar/12.1Part1.281 [Abstract] [Print PDF] [Request Permissions]  

Philipp Bucher and Bonny Bryan

Signal search analysis: a new method to localize and characterize functionally important DNA sequences
Nucl. Acids Res. 1984 12: 287-305; doi:10.1093/nar/12.1Part1.287 [Abstract] [Print PDF] [Request Permissions]  

Hannu Peltola, Hans Söderlund, and Esko Ukkonen

SEQAID: a DNA sequence assembling program based on a mathematical model
Nucl. Acids Res. 1984 12: 307-321; doi:10.1093/nar/12.1Part1.307 [Abstract] [Print PDF] [Request Permissions]  

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