Nucleic Acids Research

Articles:

Howard S. Bilofsky, Christian Burks, James W. Fickett, Walter B. Goad, Frances I. Lewitter, Wayne P. Rindone, C.David Swindell, and Chang-Shung Tung

The GenBank genetic sequence databank
Nucl. Acids Res. 1986 14: 1-4; doi:10.1093/nar/14.1.1 [Abstract] [Print PDF] [Request Permissions]  

Gregory H. Hamm and Graham N. Cameron

The EMBL data library
Nucl. Acids Res. 1986 14: 5-9; doi:10.1093/nar/14.1.5 [Abstract] [Print PDF] [Request Permissions]  

David G. George, Winona C. Barker, and Lois T. Hunt

The protein identification resource (PIR)
Nucl. Acids Res. 1986 14: 11-15; doi:10.1093/nar/14.1.11 [Abstract] [Print PDF] [Request Permissions]  

Dennis H. Smith, Douglas Brutlag, Peter Friedland, and Laurence H. Kedes

BIONET^tm: national computer resource for molecular biology
Nucl. Acids Res. 1986 14: 17-20; doi:10.1093/nar/14.1.17 [Abstract] [Print PDF] [Request Permissions]  

PROPHET, A national computing resource for life science research
Nucl. Acids Res. 1986 14: 21-24; doi:10.1093/nar/14.1.21 [Abstract] [Print PDF] [Request Permissions]  

T.F Smith, K. Gruskin, S. Tolman, and D. Faulkner

The molecular biology computer research resource
Nucl. Acids Res. 1986 14: 25-29; doi:10.1093/nar/14.1.25 [Abstract] [Print PDF] [Request Permissions]  

Gad M. Landau, Uzi Vishkin, and Ruth Nussinov

An efficient string matching algorithm with k differences for nudeotide and amino acid sequences
Nucl. Acids Res. 1986 14: 31-46; doi:10.1093/nar/14.1.31 [Abstract] [Print PDF] [Request Permissions]  

Leslie Burnett

Development of a superior strategy for computer-assisted nucleotide sequence analysis
Nucl. Acids Res. 1986 14: 47-55; doi:10.1093/nar/14.1.47 [Abstract] [Print PDF] [Request Permissions]  

Osamu Gotoh and Yusaku Tagashira

Sequence search on a supercomputer
Nucl. Acids Res. 1986 14: 57-64; doi:10.1093/nar/14.1.57 [Abstract] [Print PDF] [Request Permissions]  

Marvin B. Shapiro and Periannan Senapathy

Automated preparation of DNA sequences for publication
Nucl. Acids Res. 1986 14: 65-73; doi:10.1093/nar/14.1.65 [Abstract] [Print PDF] [Request Permissions]  

Bruce A Shapiro, Ruth Nussinov, Lewis E. Lipkin, and Jacob V. Maizel, Jr.

A sequence analysis system encompassing rules for DNA helical distortion
Nucl. Acids Res. 1986 14: 75-86; doi:10.1093/nar/14.1.75 [Abstract] [Print PDF] [Request Permissions]  

Rose A. Grymes, Paul Travers, and Alan Engelberg

GEL-A computer tool for DNA sequencing projects
Nucl. Acids Res. 1986 14: 87-98; doi:10.1093/nar/14.1.87 [Abstract] [Print PDF] [Request Permissions]  

Hannu Peltola, Hans Söderlund, and Esko Ukkonen

Algorithms for the search of amino acid patterns in nucleic acid sequences
Nucl. Acids Res. 1986 14: 99-107; doi:10.1093/nar/14.1.99 [Abstract] [Print PDF] [Request Permissions]  

Martin E. Mulligan and William R. McClure

Analysis of the occurrence of promoter-sites in DNA
Nucl. Acids Res. 1986 14: 109-126; doi:10.1093/nar/14.1.109 [Abstract] [Print PDF] [Request Permissions]  

A. Tramontane and M.F. Macchiato

Probability of coding of a DNA sequence: an algorithm to predict translated reading frames from their thermodynamic characteristics
Nucl. Acids Res. 1986 14: 127-135; doi:10.1093/nar/14.1.127 [Abstract] [Print PDF] [Request Permissions]  

Johan A. van den Berg and Michiel Osinga

A peptide to DNA conversion program
Nucl. Acids Res. 1986 14: 137-140; doi:10.1093/nar/14.1.137 [Abstract] [Print PDF] [Request Permissions]  

B. Clift, D. Haussler, R. McConnell, T.D. Schneider, and G.D. Stormo

Sequence landscapes
Nucl. Acids Res. 1986 14: 141-158; doi:10.1093/nar/14.1.141 [Abstract] [Print PDF] [Request Permissions]  

William Bains

MULTAN: a program to align multiple DNA sequences
Nucl. Acids Res. 1986 14: 159-177; doi:10.1093/nar/14.1.159 [Abstract] [Print PDF] [Request Permissions]  

Jean-Michel Claverie and Lydie Bougueleret

Heuristic informational analysis of sequences
Nucl. Acids Res. 1986 14: 179-196; doi:10.1093/nar/14.1.179 [Abstract] [Print PDF] [Request Permissions]  

Christian Fondrat, Philippe Dessen, and Pierre Le Beux

Principle of codification for quick comparisons with the entire biomolecule databanks and associated programs in FORTRAN 77
Nucl. Acids Res. 1986 14: 197-204; doi:10.1093/nar/14.1.197 [Abstract] [Print PDF] [Request Permissions]  

Charles B. Lawrence

Data structures for DNA sequence manipulation
Nucl. Acids Res. 1986 14: 205-216; doi:10.1093/nar/14.1.205 [Abstract] [Print PDF] [Request Permissions]  

Rodger Staden

The current status and portability of our sequence handling software
Nucl. Acids Res. 1986 14: 217-231; doi:10.1093/nar/14.1.217 [Abstract] [Print PDF] [Request Permissions]  

A.H. Reisner and C.A. Bucholtz

The MTX package of computer programmes for the comparison of sequences of nucleotides and amino acid residues
Nucl. Acids Res. 1986 14: 233-238; doi:10.1093/nar/14.1.233 [Abstract] [Print PDF] [Request Permissions]  

Jonathan Arnold, Virginia K. Eckenrode, Klaus Lemke, Gregory J. Phillips, and Stephen W. Schaeffer

A comprehensive package for DNA sequence analysis in FORTRAN IV for the PDP-11
Nucl. Acids Res. 1986 14: 239-254; doi:10.1093/nar/14.1.239 [Abstract] [Print PDF] [Request Permissions]  

Terry W. Stone and Kathleen N. Potter

Methylation blockage and other improvements to a comprehensive DNA analysis program
Nucl. Acids Res. 1986 14: 255-264; doi:10.1093/nar/14.1.255 [Abstract] [Print PDF] [Request Permissions]  

C.A. Bucholtz and A.H. Reisner

MBIS—an integrated system for the retrieval and analyses of sequence data from nucleic adds and proteins
Nucl. Acids Res. 1986 14: 265-272; doi:10.1093/nar/14.1.265 [Abstract] [Print PDF] [Request Permissions]  

Robert Harr, Per Fällman, Mikael Häggström, Leif Wahlström, and Petter Gustafsson

GENEUS, a computer system for DNA and protein sequence analysis containing an information retrieval system for the EMBL data library
Nucl. Acids Res. 1986 14: 273-284; doi:10.1093/nar/14.1.273 [Abstract] [Print PDF] [Request Permissions]  

R.J Douthart, J.J. Thomas, S.D. Rosier, J.E. Schmaltz, and J.W. West

Cloning simulation in the cage environment
Nucl. Acids Res. 1986 14: 285-297; doi:10.1093/nar/14.1.285 [Abstract] [Print PDF] [Request Permissions]  

Arthur L. Williams, Jr. and Ignacio Tinoco, Jr.

A dynamic programming algorithm for finding alternative RNA secondary structure
Nucl. Acids Res. 1986 14: 299-315; doi:10.1093/nar/14.1.299 [Abstract] [Print PDF] [Request Permissions]  

Kurt Stüber

Nucleic acid secondary structure prediction and display
Nucl. Acids Res. 1986 14: 317-326; doi:10.1093/nar/14.1.317 [Abstract] [Print PDF] [Request Permissions]  

Michael Gribskov, Richard R. Burgess, and John Devereux

PEPPLOT, a protein secondary structure analysis program for the UWGCG sequence analysis software package
Nucl. Acids Res. 1986 14: 327-334; doi:10.1093/nar/14.1.327 [Abstract] [Print PDF] [Request Permissions]  

Guenther Zehetner and Hans Lehrach

A computer program package for restriction map analysis and manipulation
Nucl. Acids Res. 1986 14: 335-349; doi:10.1093/nar/14.1.335 [Abstract] [Print PDF] [Request Permissions]  

Peter S. Neumaier

A program package applicable to the detection of overlaps between restriction maps
Nucl. Acids Res. 1986 14: 351-362; doi:10.1093/nar/14.1.351 [Abstract] [Print PDF] [Request Permissions]  

Eric Sobel and Hugo M. Martinez

A multiple sequence alignment program
Nucl. Acids Res. 1986 14: 363-374; doi:10.1093/nar/14.1.363 [Abstract] [Print PDF] [Request Permissions]  

Taskin Atilgan, Hugh B. Nicholas, Jr., and William H. McClain

A statistical method for correlating tRNA sequence with amino acid specificity
Nucl. Acids Res. 1986 14: 375-380; doi:10.1093/nar/14.1.375 [Abstract] [Print PDF] [Request Permissions]  

Chang-Shung Tung and Stephen C. Harvey

Computer graphics program to reveal the dependence of the gross three-dimensional structure of the B-DNA double helix on primary structure
Nucl. Acids Res. 1986 14: 381-387; doi:10.1093/nar/14.1.381 [Abstract] [Print PDF] [Request Permissions]  

K. Yamamoto and H. Yoshikura

Relation between genomic and capsid structures in RNA viruses
Nucl. Acids Res. 1986 14: 389-396; doi:10.1093/nar/14.1.389 [Abstract] [Print PDF] [Request Permissions]  

Joseph L. Modelevsky, Franklin Norris, and Gloria Griesinger

GENEVIEW and the DNACE data bus: computational tools for analysis, display and exchange of genetic information
Nucl. Acids Res. 1986 14: 397-403; doi:10.1093/nar/14.1.397 [Abstract] [Print PDF] [Request Permissions]  

C.M. Tolstoshev, H.W.D. Matthes, and P. Oudet

Computer management of oligonucleotide synthesis on cellulose filters
Nucl. Acids Res. 1986 14: 405-415; doi:10.1093/nar/14.1.405 [Abstract] [Print PDF] [Request Permissions]  

J.K. Elder, D.K. Green, and E.M. Southern

Automatic reading of DNA sequencing gel autoradiographs using a large format digital scanner
Nucl. Acids Res. 1986 14: 417-424; doi:10.1093/nar/14.1.417 [Abstract] [Print PDF] [Request Permissions]  

Leslie Burnett, Anthony Basten, and William J. Hensley

Should nueleotide sequence analyzing computer algorithms always extend homologies by extending homologies?
Nucl. Acids Res. 1986 14: 425-430; doi:10.1093/nar/14.1.425 [Abstract] [Print PDF] [Request Permissions]  

Christopher C. Marvel

A program for the identification of tRNA-like structures in DNA sequence data
Nucl. Acids Res. 1986 14: 431-435; doi:10.1093/nar/14.1.431 [Abstract] [Print PDF] [Request Permissions]  

Philip Taylor

A computer program for translating DNA sequences Into protein
Nucl. Acids Res. 1986 14: 437-441; doi:10.1093/nar/14.1.437 [Abstract] [Print PDF] [Request Permissions]  

David W. Mount and Bruce Conrad

Improved programs for DNA and protein sequence analysis on the IBM personal computer and other standard computer systems
Nucl. Acids Res. 1986 14: 443-454; doi:10.1093/nar/14.1.443 [Abstract] [Print PDF] [Request Permissions]  

B. Franz Lang and Gertraud Burger

A collection of programs for nucleic acid and protein analysis, written in FORTRAN 77 for IBM-PC compatible microcomputers
Nucl. Acids Res. 1986 14: 455-465; doi:10.1093/nar/14.1.455 [Abstract] [Print PDF] [Request Permissions]  

Eric H. Harley

A general DNA analysis program for the Hewlett-Packard Model 86/87 microcomputer
Nucl. Acids Res. 1986 14: 467-477; doi:10.1093/nar/14.1.467 [Abstract] [Print PDF] [Request Permissions]  

J. Pustell and F.C. Kafatos

A convenient and adaptable microcomputer environment for DNA and protein sequence manipulation and analysis
Nucl. Acids Res. 1986 14: 479-488; doi:10.1093/nar/14.1.479 [Abstract] [Print PDF] [Request Permissions]  

James C. Dabrowiak, Andrew Skorobogaty, Ned Rich, Calvin P.H. Vary, and John N. Vournakis

Computer assisted microdentsitometric analysis of footprinting autoradiographic DATA
Nucl. Acids Res. 1986 14: 489-499; doi:10.1093/nar/14.1.489 [Abstract] [Print PDF] [Request Permissions]  

Eugene W. Myers and David W. Mount

Computer program for the IBM personal computer which searches for approximate matches to short oligonucleotide sequences in long target DNA sequences
Nucl. Acids Res. 1986 14: 501-508; doi:10.1093/nar/14.1.501 [Abstract] [Print PDF] [Request Permissions]  

J.E. Cowin, C.H. Jellis, and D. Rickwood

A new method of representing DNA sequences which combines ease of visual analysis with machine readability
Nucl. Acids Res. 1986 14: 509-515; doi:10.1093/nar/14.1.509 [Abstract] [Print PDF] [Request Permissions]  

Robert E. Johnston, J.M. Mackenzie, Jr., and W.G. Dougherty

Assembly of overlapping DNA sequences by a program written in BASIC for 64K CP/M and MS-DOS IBM-compatible microcomputers
Nucl. Acids Res. 1986 14: 517-527; doi:10.1093/nar/14.1.517 [Abstract] [Print PDF] [Request Permissions]  

Armand MacMurray

DIGICALC: a restriction fragment analysis program
Nucl. Acids Res. 1986 14: 529-536; doi:10.1093/nar/14.1.529 [Abstract] [Print PDF] [Request Permissions]  

Paul A. Blanz and Siegfried Kleindienst

A computer program for comparative analysis of nucleic acid sequences
Nucl. Acids Res. 1986 14: 537-541; doi:10.1093/nar/14.1.537 [Abstract] [Print PDF] [Request Permissions]  

Gopal Krishnan, Rajinder K. Kaul, and Pudur Jagadeeswaran

DNA sequence analysis: a procedure to find homologies among many sequences
Nucl. Acids Res. 1986 14: 543-550; doi:10.1093/nar/14.1.543 [Abstract] [Print PDF] [Request Permissions]  

H. Marcaud, J. Gabarro-Arpa, R. Ehrlich, and C. Reiss

An algorithm for studying cooperative transitions in DNA
Nucl. Acids Res. 1986 14: 551-558; doi:10.1093/nar/14.1.551 [Abstract] [Print PDF] [Request Permissions]  

Thomas Adrian and Walter Heinrich

COMAP: A comigrating analysis program for estimating the relationship of adenoviruses on the genome level
Nucl. Acids Res. 1986 14: 559-565; doi:10.1093/nar/14.1.559 [Abstract] [Print PDF] [Request Permissions]  

Robert M. Lewis

PROBFIND: a computer program for selecting oligonucleotide probes from peptide sequences
Nucl. Acids Res. 1986 14: 567-570; doi:10.1093/nar/14.1.567 [Abstract] [Print PDF] [Request Permissions]  

José Campione-Piccardo and Martha Ruben

An integrated software system for microcomputer management of recombinant DNA data
Nucl. Acids Res. 1986 14: 571-574; doi:10.1093/nar/14.1.571 [Abstract] [Print PDF] [Request Permissions]  

Cheryl E. Gariepy, Margaret I. Lomax, and Lawrence I. Grossman

SPLINT: a cubic spline interpolation progam for the analysis of fragment sizes in one dimensional electrophoresis gels^*
Nucl. Acids Res. 1986 14: 575-581; doi:10.1093/nar/14.1.575 [Abstract] [Print PDF] [Request Permissions]  

Christian Marck

Fast analysis of DNA and protein sequence on Apple IIe: restriction sites search, alignment of short sequence and dot matrix analysis
Nucl. Acids Res. 1986 14: 583-590; doi:10.1093/nar/14.1.583 [Abstract] [Print PDF] [Request Permissions]  

Robert H. Gross

A DNA sequence analysis program for the Apple Macintosh
Nucl. Acids Res. 1986 14: 591-596; doi:10.1093/nar/14.1.591 [Abstract] [Print PDF] [Request Permissions]  

Brian Fristensky

Improving the efficiency of dot-matrix similarity searches through use of an oligomer table
Nucl. Acids Res. 1986 14: 597-610; doi:10.1093/nar/14.1.597 [Abstract] [Print PDF] [Request Permissions]  

Philip E. Doggett and Frederick R. Blattner

Personal access to sequence databases on personal computers
Nucl. Acids Res. 1986 14: 611-619; doi:10.1093/nar/14.1.611 [Abstract] [Print PDF] [Request Permissions]  

Author index:

Author index
Nucl. Acids Res. 1986 14: 621; doi:10.1093/nar/14.1.621 [Print PDF] [Request Permissions]  

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