Nucleic Acids Research

SURVEY AND SUMMARY:

Tatyana V. Ilyina and Eugene V. Koonin

Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria
Nucl. Acids Res. 1992 20: 3279-3285; doi:10.1093/nar/20.13.3279 [Abstract] [Print PDF] [Request Permissions]  

MOLECULAR BIOLOGY:

Dieter Lang, Helmut Fickenscher, and Thomas Stamminger

Analysis of proteins binding to the proximal promoter region of the human cytomegalovirus IE-1/2 enhancer/promoter reveals both consensus and aberrant recognition sequences for transcription factors Sp1 and CREB
Nucl. Acids Res. 1992 20: 3287-3295; doi:10.1093/nar/20.13.3287 [Abstract] [Print PDF] [Request Permissions]  

Judy Wynne and Richard Treisman

SRF and MCM1 have related but distinct DNA binding specificities
Nucl. Acids Res. 1992 20: 3297-3303; doi:10.1093/nar/20.13.3297 [Abstract] [Print PDF] [Request Permissions]  

Takashi Yura, Hirotada Mori, Hiroki Nagai, Toshio Nagata, Akira Ishihama, Nobuyuki Fujita, Katsumi Isono, Kiyoshi Mizobuchi, and Atsuo Nakata

Systematic sequencing of the Escherichia coli genome: analysis of the 0 – 2.4 min region
Nucl. Acids Res. 1992 20: 3305-3308; doi:10.1093/nar/20.13.3305 [Abstract] [Print PDF] [Request Permissions]  

Marianne Bénard and Gérard Pierron

Mapping of a Physarum chromosomal origin of replication tightly linked to a developmentally-regulated profilin gene
Nucl. Acids Res. 1992 20: 3309-3315; doi:10.1093/nar/20.13.3309 [Abstract] [Print PDF] [Request Permissions]  

Ralf Janknecht and Alfred Nordheim

Elk-1 protein domains required for direct and SRF-assisted DNA-binding
Nucl. Acids Res. 1992 20: 3317-3324; doi:10.1093/nar/20.13.3317 [Abstract] [Print PDF] [Request Permissions]  

Hidehito Urata, Emiko Ogura, Keiko Shinohara, Yoshiaki Ueda, and Masao Akagi

Synthesis and properties of mirror-image DNA
Nucl. Acids Res. 1992 20: 3325-3332; doi:10.1093/nar/20.13.3325 [Abstract] [Print PDF] [Request Permissions]  

Ivo Galli, Sanae M.M. Iguchi-Ariga, and Hiroyoshi Ariga

The AT-rich tract of the SV40 oh core: negative synergism and specific recognition by single stranded and duplex DNA binding proteins
Nucl. Acids Res. 1992 20: 3333-3339; doi:10.1093/nar/20.13.3333 [Abstract] [Print PDF] [Request Permissions]  

Helen U. Enright, Wesley J. Miller, and Robert P. Hebbel

Nucleosomal histone protein protects DNA from iron-mediated damage
Nucl. Acids Res. 1992 20: 3341-3346; doi:10.1093/nar/20.13.3341 [Abstract] [Print PDF] [Request Permissions]  

James J. Champoux

Topoisomerase I is preferentially associated with normal SV40 replicative intermediates, but is associated with both replicating and nonreplicating SV40 DNAs which are deficient in histones
Nucl. Acids Res. 1992 20: 3347-3352; doi:10.1093/nar/20.13.3347 [Abstract] [Print PDF] [Request Permissions]  

Dan S. Ray, Jane C. Hines, and Mary Anderson

Kinetoplast-associated DNA topoisomerase in Crithidia fasciculata: crosslinking of mitochondrial topoisomerase II to both minicircles and maxicircles in cells treated with the topoisomerase inhibitor VP16
Nucl. Acids Res. 1992 20: 3353-3356; doi:10.1093/nar/20.13.3353 [Abstract] [Print PDF] [Request Permissions]  

Hirokazu Kotani, Akira Kawamura, Asako Takahashi, Masako Nakatsuji, Nobutsugu Hiraoka, Kazuo Nakajima, and Mituru Takanami

Site-specific dissection of E.coli chromosome by terminase
Nucl. Acids Res. 1992 20: 3357-3360; doi:10.1093/nar/20.13.3357 [Abstract] [Print PDF] [Request Permissions]  

Alain Guimond and Tom Moss

Variants of the Xenopus laevis ribosomal transcription factor xUBF are developmentally regulated by differential splicing
Nucl. Acids Res. 1992 20: 3361-3366; doi:10.1093/nar/20.13.3361 [Abstract] [Print PDF] [Request Permissions]  

Mike Fried and Paolo Colombo

Functional elements of the ribosomal protein L7a (rpL7a) gene promoter region and their conservation between mammals and birds
Nucl. Acids Res. 1992 20: 3367-3373; doi:10.1093/nar/20.13.3367 [Abstract] [Print PDF] [Request Permissions]  

Robbert G. van der Most, Leo Heijnen, Willy J.M. Spaan, and Raoul J. de Groot

Homologous RNA recombination allows efficient introduction of site-specific mutations into the genome of coronavirus MHV-A59 via synthetic co-replicating RNAs
Nucl. Acids Res. 1992 20: 3375-3381; doi:10.1093/nar/20.13.3375 [Abstract] [Print PDF] [Request Permissions]  

Holly L. Prentice and Robert E. Kingston

Mammalian promoter element function in the fission yeast Schizosaccharomyces pombe
Nucl. Acids Res. 1992 20: 3383-3390; doi:10.1093/nar/20.13.3383 [Abstract] [Print PDF] [Request Permissions]  

Kevin Gaston, Andrew Bell, Stephen Busby, and Mike Fried

A comparison of the DNA bending activities of the DNA binding proteins CRP and TFIID
Nucl. Acids Res. 1992 20: 3391-3396; doi:10.1093/nar/20.13.3391 [Abstract] [Print PDF] [Request Permissions]  

Yves Quentin

Origin of the Alu family: a family of Alu-like monomers gave birth to the left and the right arms of the Alu elements
Nucl. Acids Res. 1992 20: 3397-3401; doi:10.1093/nar/20.13.3397 [Abstract] [Print PDF] [Request Permissions]  

Sergei M. Gryaznov and Robert L. Letsinger

Synthesis and properties of oligonucleotides containing aminodeoxythymidine units
Nucl. Acids Res. 1992 20: 3403-3409; doi:10.1093/nar/20.13.3403 [Abstract] [Print PDF] [Request Permissions]  

Calum MacKellar, Duncan Graham, David W. Will, Stephen Burgess, and Tom Brown

Synthesis and physical properties of anti-HIV antisense oligonucleotides bearing terminal lipophilic groups
Nucl. Acids Res. 1992 20: 3411-3417; doi:10.1093/nar/20.13.3411 [Abstract] [Print PDF] [Request Permissions]  

Heidi Major Sleister, Kathleen A. Mills, Sue E. Blackwell, Ann M. Killary, Jeffrey C. Murray, and Robert E. Malone

Construction of a human chromosome 4 YAC pool and analysis of artificial chromosome stability
Nucl. Acids Res. 1992 20: 3419-3425; doi:10.1093/nar/20.13.3419 [Abstract] [Print PDF] [Request Permissions]  

Tamara E. Cheyette, Ip Tony, Steven Faber, Yasuhisa Matsui, and Roger Chalkley

Characterization of the factors binding to a PEPCK gene upstream hypersensitive site with LCR activity
Nucl. Acids Res. 1992 20: 3427-3433; doi:10.1093/nar/20.13.3427 [Abstract] [Print PDF] [Request Permissions]  

Dvora Ronen, Yael Teitz, Naomi Goldfinger, and Varda Rotter

Expression of wild-type and mutant p53 proteins by recombinant vaccinia viruses
Nucl. Acids Res. 1992 20: 3435-3441; doi:10.1093/nar/20.13.3435 [Abstract] [Print PDF] [Request Permissions]  

Véronique Ségault, Annie Mougin, Anne Grégoire, Josette Banroques, and Christiane Branlant

An experimental study of Saccharomyces cerevisiae U3 snRNA conformation in solution
Nucl. Acids Res. 1992 20: 3443-3451; doi:10.1093/nar/20.13.3443 [Abstract] [Print PDF] [Request Permissions]  

Gordon B. Hutchinson and Michael R. Hayden

The prediction of exons through an analysis of spliceable open reading frames
Nucl. Acids Res. 1992 20: 3453-3462; doi:10.1093/nar/20.13.3453 [Abstract] [Print PDF] [Request Permissions]  

Grazyna E. Sroga, Fumiko Nemoto, Yoshiyuki Kuchino, and Glenn Björk

Insertion (sufB) in the anticodon loop or base substitution (sufC) in the anticodon stem of tRNA^Pro₂ from Salmonella typhimurium induces suppression of frameshift mutations
Nucl. Acids Res. 1992 20: 3463-3469; doi:10.1093/nar/20.13.3463 [Abstract] [Print PDF] [Request Permissions]  

Michael C. O'Neill

Escherichia coli promoters: neural networks develop distinct descriptions in learning to search for promoters of different spacing classes
Nucl. Acids Res. 1992 20: 3471-3477; doi:10.1093/nar/20.13.3471 [Abstract] [Print PDF] [Request Permissions]  

Bernard Martin, Odile Humbert, Miguel Camara, Eric Guenzi, John Walker, Timothy Mitchell, Peter Andrew, Marc Prudhomme, Geneviève Alloing, Regine Hakenbeck, Donald A. Morrison, Graham J. Boulnois, and Jean-Pierre Claverys

A highly conserved repeated DNA element located in the chromosome of Streptococcus pneumoniae
Nucl. Acids Res. 1992 20: 3479-3483; doi:10.1093/nar/20.13.3479 [Abstract] [Print PDF] [Request Permissions]  

Douglas P. Kalinowski, Sharon Illenye, and Ben Van Houten

Analysis of DNA damage and repair in murine leukemia L1210 cells using a quantitative polymerase chain reaction assay
Nucl. Acids Res. 1992 20: 3485-3494; doi:10.1093/nar/20.13.3485 [Abstract] [Print PDF] [Request Permissions]  

T.W. Wang, A.S. Lewin, and G.M. Small

A negative regulating element controlling transcription of the gene encoding acyl-CoA oxidase in Saccharomyces cerevisiae
Nucl. Acids Res. 1992 20: 3495-3500; doi:10.1093/nar/20.13.3495 [Abstract] [Print PDF] [Request Permissions]  

CHEMISTRY:

Robert A. Stull, Leslie A. Taylor, and Francis C. Szoka, Jr

Predicting antisense oligonucleotide inhibitory efficacy: a computational approach using histograms and thermodynamic indices
Nucl. Acids Res. 1992 20: 3501-3508; doi:10.1093/nar/20.13.3501 [Abstract] [Print PDF] [Request Permissions]  

METHODS:

J.L. Vaerman, P. Moureau, Y. Larondelle, P. Martiat, and M. Philippe

Prediction of oligodeoxyribonucleotides eluting salt conditions on anion exchange column
Nucl. Acids Res. 1992 20: 3522; doi:10.1093/nar/20.13.3522 [Print PDF] [Request Permissions]  

Andrew J. Bannister and Tony Kouzarides

Basic peptides enhance protein/ DNA interaction in vitro
Nucl. Acids Res. 1992 20: 3523; doi:10.1093/nar/20.13.3523 [Print PDF] [Request Permissions]  

Takashi Ito, Cassandra L. Smith, and Charles R. Cantor

Triplex affinity capture of a single copy clone from a yeast genomic library
Nucl. Acids Res. 1992 20: 3524; doi:10.1093/nar/20.13.3524 [Print PDF] [Request Permissions]  

Christopher J. Larson and Gregory L. Verdine

A high-capacity column for affinity purification of sequence-specific DNA-binding proteins
Nucl. Acids Res. 1992 20: 3525; doi:10.1093/nar/20.13.3525 [Print PDF] [Request Permissions]  

Puloma Kamadar, Gretchen Von Allmen, and Finnerty Victoria

Transient expression of DNA in Drosophila via electroporation
Nucl. Acids Res. 1992 20: 3526; doi:10.1093/nar/20.13.3526 [Print PDF] [Request Permissions]  

Hinrich Abken and Barbara Reifenrath

A procedure to standardize CAT reporter gene assay
Nucl. Acids Res. 1992 20: 3527; doi:10.1093/nar/20.13.3527 [Print PDF] [Request Permissions]  

Ignacio R. Rodriguez and Gerald J. Chader

A novel method for the isolation of tissue-specific genes
Nucl. Acids Res. 1992 20: 3528; doi:10.1093/nar/20.13.3528 [Print PDF] [Request Permissions]  

Barry Milavetz

Preparation of nested deletions in single-strand DNA using oligonucleotides containing partially random base sequences
Nucl. Acids Res. 1992 20: 3529-3530; doi:10.1093/nar/20.13.3529 [Print PDF] [Request Permissions]  

Corrigendum:

B.J. Warn-Cramer, G.J. Broze, Jr., and E.A. Kornives

cDNA sequence of rabbit tissue factor pathway inhibitor
Nucl. Acids Res. 1992 20: 3548; doi:10.1093/nar/20.13.3548 [Abstract] [Print PDF] [Request Permissions]  

Errata:

F. Seela and T. Grein

7-deaza-2'-deoxyadenosine and 3-deaza-2'-deoxyadenosine replacing dA within d(A₆-tracts: differential bending at 3'- and 5'-junctions of d(A₆ d(T₆) and B-DNA
Nucl. Acids Res. 1992 20: 3549; doi:10.1093/nar/20.13.3549 [Abstract] [Print PDF] [Request Permissions]  

A.F. Nichols and A. Sancar

Purification of PCNA as a nucleotide excision repair protein
Nucl. Acids Res. 1992 20: 3549; doi:10.1093/nar/20.13.3549-a [Abstract] [Print PDF] [Request Permissions]  

Author index:

Author index
Nucl. Acids Res. 1992 20: 3547; doi:10.1093/nar/20.13.3547 [Print PDF] [Request Permissions]  

FOR THE RECORD SEQUENCE:

Nathalie Dinouël, Frédéric Sor, and Hiroshi Fukuhara

Nucleotide sequence of transfer RNA genes from the linear mitochondrial DNA of the yeast Williopsis mrakii and Pichia pijperi
Nucl. Acids Res. 1992 20: 3509; doi:10.1093/nar/20.13.3509 [Print PDF] [Request Permissions]  

Satoru Okumura and Hiroaki Shimada

Nucleotide sequence of genes for a 5.8S and 25S rRNA from rape seed (Brassica napus)
Nucl. Acids Res. 1992 20: 3510; doi:10.1093/nar/20.13.3510 [Print PDF] [Request Permissions]  

C. Luschnig and D. Schweizer

Nucleotide sequence of trnl^(CAU) and rpl23 from Arabidopsis thaliana chloroplast genome
Nucl. Acids Res. 1992 20: 3511; doi:10.1093/nar/20.13.3511 [Print PDF] [Request Permissions]  

Thein Thein Aye, Toshikazu Uchida, Xue-Zhung Ma, Fusae lida, Toshio Shikata, Hui Zhuang, and Khin Maung Win

Complete nucleotide sequence of a hepatitis E virus isolated from the Xinjiang epidemic (1986–1988) of China
Nucl. Acids Res. 1992 20: 3512; doi:10.1093/nar/20.13.3512 [Print PDF] [Request Permissions]  

Jozef Grones and Jan Turna

ApaCl, an isoschizomer of BamHl isolated from Acetobacter pasteurianus
Nucl. Acids Res. 1992 20: 3513; doi:10.1093/nar/20.13.3513 [Print PDF] [Request Permissions]  

Jitsuhiro Matsugi, Katsutoshi Murao, and Hisayuki Ishikura

Nucleotide sequence of tryptophan tRNA from Bacillus subtilis
Nucl. Acids Res. 1992 20: 3514; doi:10.1093/nar/20.13.3514 [Print PDF] [Request Permissions]  

Makoto Hidaka, Yukiko Yoshida, Haruhiko Masaki, Shigetou Namba, Shuichi Yamashita, Tsuneo Tsuchizaki, and Takeshi Uozumi

Cloning and sequencing of the 3' half of a potato virus Y (O strain) genome encoding the 5k protein, protease, polymerase and coat protein
Nucl. Acids Res. 1992 20: 3515; doi:10.1093/nar/20.13.3515 [Print PDF] [Request Permissions]  

Wagner V. Yotov and René St-Arnaud

Nucleotide sequence of a mouse cDNA encoding the non-histone chromosomal high mobility group protein-1 (HMG1)
Nucl. Acids Res. 1992 20: 3516; doi:10.1093/nar/20.13.3516 [Print PDF] [Request Permissions]  

Masahiro Kamekura and Yukio Seno

Nucleotide sequences of 16S rRNA encoding genes from halophilic archaea Halococcus morrhuae NRC16008 and Haloferax mediterranei ATCC33500
Nucl. Acids Res. 1992 20: 3517; doi:10.1093/nar/20.13.3517 [Print PDF] [Request Permissions]  

Henrik Ørum, Henrik Nielsen, and Jan Engberg

Sequence of a new snRNA from the ciliate Tetrahymena thermophila
Nucl. Acids Res. 1992 20: 3518; doi:10.1093/nar/20.13.3518 [Print PDF] [Request Permissions]  

Ming-yu Wang, Michael Cutler, Iman Karimpour, and Kenneth C. Kleene

Nucleotide sequence of a mouse testis poly(A) binding protein cDNA
Nucl. Acids Res. 1992 20: 3519; doi:10.1093/nar/20.13.3519 [Print PDF] [Request Permissions]  

Jang H. Han and Michael Houghton

Group specific sequences and conserved secondary structures at the 3' end of HCV genome and its implication for viral replication
Nucl. Acids Res. 1992 20: 3520; doi:10.1093/nar/20.13.3520 [Print PDF] [Request Permissions]  

M.Victoria Mendiola and Fernando de la Cruz

IS91 transposase is related to the rolling-circle-type replication proteins of the pUB110 family of plasmids
Nucl. Acids Res. 1992 20: 3521; doi:10.1093/nar/20.13.3521 [Print PDF] [Request Permissions]  

NUCLEOTIDE SEQUENCE UPDATE:

New nucleotide sequence data on the EMBL File Server
Nucl. Acids Res. 1992 20: 3531-3546; doi:10.1093/nar/20.13.3531 [Print PDF] [Request Permissions]  

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