Nucl. Acids Res. -- Table of Contents (21 [10, May 25 1993])

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Contents: Volume 21, Number 10    25 May 1993    [Index by Author]

       COMPUTATIONAL BIOLOGY

       MOLECULAR BIOLOGY

       CHEMISTRY

       METHODS

       Author index

       ENZYMOLOGY

       GENOME STRUCTURE AND MAPPING

       SEQUENCE

       STRUCTURAL BIOLOGY

Other Issues:

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COMPUTATIONAL BIOLOGY:

Nick Goldman: Nucleotide, dinucleotide and trinucleotide frequencies explain patterns observed in chaos game representations of DNA sequences
Nucl. Acids Res. 1993 21: 2487-2491; doi:10.1093/nar/21.10.2487 [Abstract] [Print PDF] [Request Permissions]

MOLECULAR BIOLOGY:

Kazuo Harada and Leslie E. Orgel: Unexpected substrate specificity of T4 DNA ligase revealed by in vitro selection
Nucl. Acids Res. 1993 21: 2287-2291; doi:10.1093/nar/21.10.2287 [Abstract] [Print PDF] [Request Permissions]

Rob Pronk and Peter C. van der Vliet: The adenovirus terminal protein influences binding of replication proteins and changes the origin structure
Nucl. Acids Res. 1993 21: 2293-2300; doi:10.1093/nar/21.10.2293 [Abstract] [Print PDF] [Request Permissions]

Beatrice Cardinali, Manlio Di Cristina, and Paola Pierandrei-Amaldi: Interaction of proteins with the mRNA for ribosomal protein L1 in Xenopus: structural characterization of in vivo complexes and identification of proteins that bind in vivo to its 5’UTR
Nucl. Acids Res. 1993 21: 2301-2308; doi:10.1093/nar/21.10.2301 [Abstract] [Print PDF] [Request Permissions]

Takashi Ueno, Hiroyuki Ito, Fusao Kimizuka, Hirokazu Kotani, and Kazuo Nakajima: Gene structure and expression of the Mbol restriction – modification system
Nucl. Acids Res. 1993 21: 2309-2313; doi:10.1093/nar/21.10.2309 [Abstract] [Print PDF] [Request Permissions]

Laurent Duret, Franck Dorkeld, and Christian Gautier: Strong conservation of non-coding sequences during vertebrates evolution: potential involvement in post-transcriptional regulation of gene expression
Nucl. Acids Res. 1993 21: 2315-2322; doi:10.1093/nar/21.10.2315 [Abstract] [Print PDF] [Request Permissions]

Reinhard Dammann, Renzo Lucchini, Theo Koller, and José M. Sogo: Chromatin structures and transcription of rDNA in yeast Saccharomyces cerevisiae
Nucl. Acids Res. 1993 21: 2331-2338; doi:10.1093/nar/21.10.2331 [Abstract] [Print PDF] [Request Permissions]

Hiroyuki Kamiya, Naoko Murata, Tetsuya Murata, Shigenori Iwai, Akio Matsukage, Chikahide Masutani, Fumio Hanaoka, and Eiko Ohtsuka: Cyclobutane thymine dimers in a ras proto-oncogene hot spot activate the gene by point mutation
Nucl. Acids Res. 1993 21: 2355-2361; doi:10.1093/nar/21.10.2355 [Abstract] [Print PDF] [Request Permissions]

Roland Lloubés, Claude Lazdunski, Michéle Granger-Schnarr, and Manfred Schnarr: DNA sequence determinants of LexA-induced DNA bending
Nucl. Acids Res. 1993 21: 2363-2367; doi:10.1093/nar/21.10.2363 [Abstract] [Print PDF] [Request Permissions]

John M. Greene, Hiroki Otani, Peter J. Good, and Igor B. Dawid: A novel family of retrotransposon-like elements in Xenopus laevis with a transcript inducible by two growth factors
Nucl. Acids Res. 1993 21: 2375-2381; doi:10.1093/nar/21.10.2375 [Abstract] [Print PDF] [Request Permissions]

Robert G. Drager and Richard B. Hallick: A complex twintron is excised as four individual introns
Nucl. Acids Res. 1993 21: 2389-2394; doi:10.1093/nar/21.10.2389 [Abstract] [Print PDF] [Request Permissions]

Vincent Murray, Chutima Monchawin, and Phillip R. England: The determination of the sequences present in the shadow bands of a dinucleotide repeat PCR
Nucl. Acids Res. 1993 21: 2395-2398; doi:10.1093/nar/21.10.2395 [Abstract] [Print PDF] [Request Permissions]

Brent Berwin and Eric Barklis: Retrovirus-mediated insertion of expressed and non-expressed genes at identical chromosomal locations
Nucl. Acids Res. 1993 21: 2399-2407; doi:10.1093/nar/21.10.2399 [Abstract] [Print PDF] [Request Permissions]

Mariko Katoh, Masafumi Hirono, Tohru Takemasa, Masashi Kimura, and Yoshio Watanabe: A micronucleus-specific sequence exists in the 5'-upstream region of calmodulin gene in Tetrahymena thermophila
Nucl. Acids Res. 1993 21: 2409-2414; doi:10.1093/nar/21.10.2409 [Abstract] [Print PDF] [Request Permissions]

Yong Liu and Michael J. Leibowitz: Variation and in vitro splicing of group I introns in rRNA genes of Pneumocystis carinii
Nucl. Acids Res. 1993 21: 2415-2421; doi:10.1093/nar/21.10.2415 [Abstract] [Print PDF] [Request Permissions]

Rafael J. Yáñez, Mike Boursnell, Marfa L. Nogal, Luis Yuste, and Eladio Viñuela: African swine fever virus encodes two genes which share significant homology with the two largest subunits of DNA-dependent RNA polymerases
Nucl. Acids Res. 1993 21: 2423-2427; doi:10.1093/nar/21.10.2423 [Abstract] [Print PDF] [Request Permissions]

Janice M. Zengel and Lasse Lindahl: Domain I of 23S rRNA competes with a paused transcription complex for ribosomal protein L4 of Escherichia coli
Nucl. Acids Res. 1993 21: 2429-2435; doi:10.1093/nar/21.10.2429 [Abstract] [Print PDF] [Request Permissions]

Sha Mi and Richard J. Roberts: The DNA binding affinity of Hhal methylase is increased by a single amino acid substitution in the catalytic center
Nucl. Acids Res. 1993 21: 2459-2464; doi:10.1093/nar/21.10.2459 [Abstract] [Print PDF] [Request Permissions]

Genevieve Stapleton, Maria Patrizia Somma, and Patrizia Lavia: Cell type-specific interactions of transcription factors with a housekeeping promoter in vivo
Nucl. Acids Res. 1993 21: 2465-2471; doi:10.1093/nar/21.10.2465 [Abstract] [Print PDF] [Request Permissions]

Hong Xue, Anne-Lise Glasser, Jean Desgres, and Henri Grosjean: Modified nucleotides in Bacillus subtilis tRNA^Trp hyperexpressed in Escherichia coli
Nucl. Acids Res. 1993 21: 2479-2486; doi:10.1093/nar/21.10.2479 [Abstract] [Print PDF] [Request Permissions]

Vincent Laudet, Dominique Stehelin, and Hans Clevers: Ancestry and diversity of the HMG box superfamily
Nucl. Acids Res. 1993 21: 2493-2501; doi:10.1093/nar/21.10.2493 [Abstract] [Print PDF] [Request Permissions]

Osamu Saitoh, Atsuko Fujisawa-Sehara, Yo-ichi Nabeshima, and Muthu Periasamy: Expression of myogenic factors in denervated chicken breast muscle: isolation of the chicken Myf5 gene
Nucl. Acids Res. 1993 21: 2503-2509; doi:10.1093/nar/21.10.2503 [Abstract] [Print PDF] [Request Permissions]

CHEMISTRY:

H.H. Klump, E. Schmid, and M. Wosgien: Energetics of Z-DNA formation in poly d(A-T), poly d(G-C), and poly d(A-C) poly d(G-T)
Nucl. Acids Res. 1993 21: 2343-2348; doi:10.1093/nar/21.10.2343 [Abstract] [Print PDF] [Request Permissions]

Robert W. Sobol, Ramamurthy Charubala, Wolfgang Pfleiderer, and Robert J. Suhadolnik: Chemical synthesis and biological characterization of phosphorothioate analogs of 2’, 5’-3’-deoxyadenylate trimer
Nucl. Acids Res. 1993 21: 2437-2443; doi:10.1093/nar/21.10.2437 [Abstract] [Print PDF] [Request Permissions]

METHODS:

Stefan Kochanek, Doris Renz, and Walter Doerfler: Probing DNA-protein interactions in vitro with the CpG DNA methyltransferase
Nucl. Acids Res. 1993 21: 2339-2342; doi:10.1093/nar/21.10.2339 [Abstract] [Print PDF] [Request Permissions]

Helena V. Chetverina and Alexander B. Chetverin: Cloning of RNA molecules in vitro
Nucl. Acids Res. 1993 21: 2349-2353; doi:10.1093/nar/21.10.2349 [Abstract] [Print PDF] [Request Permissions]

Roger Pellé and Noel B. Murphy: In vivo UV-cross-linking hybridization: a powerful technique for isolating RNA binding proteins. Application to trypanosome mini-exon derived RNA
Nucl. Acids Res. 1993 21: 2453-2458; doi:10.1093/nar/21.10.2453 [Abstract] [Print PDF] [Request Permissions]

Peter A. King, Elizabeth Jamison, Daniel Strahs, Vernon E. Anderson, and Michael Brenowitz: ‘Footprinting’ proteins on DNA with peroxonitrous acid
Nucl. Acids Res. 1993 21: 2473-2478; doi:10.1093/nar/21.10.2473 [Abstract] [Print PDF] [Request Permissions]

Robin B. Gasser, Neil B. Chilton, Hervé Hoste, and Ian Beveridge: Rapid sequencing of rDNA from single worms and eggs of parasitic helminths
Nucl. Acids Res. 1993 21: 2525-2526; doi:10.1093/nar/21.10.2525 [Print PDF] [Request Permissions]

Guo-Liang Wang, Rod A. Wing, and Andrew H. Paterson: PCR amplification from single seeds, facilitating DNA marker-assisted breeding
Nucl. Acids Res. 1993 21: 2527; doi:10.1093/nar/21.10.2527 [Print PDF] [Request Permissions]

Yu-Ker Wang and David C. Schwartz: Chopped inserts: a convenient alternative to agarose/DNA inserts or beads
Nucl. Acids Res. 1993 21: 2528; doi:10.1093/nar/21.10.2528 [Print PDF] [Request Permissions]

Mridula Bose, Anil Chander, and R.H. Das: A rapid and gentle method for the isolation of genomic DNA from mycobacteria
Nucl. Acids Res. 1993 21: 2529-2530; doi:10.1093/nar/21.10.2529 [Print PDF] [Request Permissions]

Maria Polycarpou-Schwarz and Athanasios G. Papavassiliou: Distinguishing specific from nonspecific complexes on Southwestern blots by a rapid DMS protection assay
Nucl. Acids Res. 1993 21: 2531-2532; doi:10.1093/nar/21.10.2531 [Print PDF] [Request Permissions]

Emiko Naito, Kohji Dewa, Haruo Yamanouchi, Shuko Takagi, and Ryo Kominami: Sex determination using the hypomethylation of a human macro-satellite DXZ4 in female cells
Nucl. Acids Res. 1993 21: 2533-2534; doi:10.1093/nar/21.10.2533 [Print PDF] [Request Permissions]

F. Svinarchuk, V. Mastyugin, V. Gorn, M. Dobrikov, and S. Doronin: Determination of the molecular mass of the transcription factor interacting with FBS2 in c-fos promoter
Nucl. Acids Res. 1993 21: 2535-2536; doi:10.1093/nar/21.10.2535 [Print PDF] [Request Permissions]

Vern B. Carruthers, Lex H.T. van der Ploeg, and George A.M. Cross: DNA-mediated transformation of bloodstream-form Trypanosoma brucei
Nucl. Acids Res. 1993 21: 2537-2538; doi:10.1093/nar/21.10.2537 [Print PDF] [Request Permissions]

Author index:

: Author index
Nucl. Acids Res. 1993 21: 2539; doi:10.1093/nar/21.10.2539 [Print PDF] [Request Permissions]

ENZYMOLOGY:

Narendra Tuteja, Khalilur Rahman, Renu Tuteja, and Arturo Falaschi: Human DNA helicase V, a novel DNA unwinding enzyme from HeLa cells
Nucl. Acids Res. 1993 21: 2323-2329; doi:10.1093/nar/21.10.2323 [Abstract] [Print PDF] [Request Permissions]

E. Jean Finnegan and Elizabeth S. Dennis: Isolation and identification by sequence homology of a putative cytosine methyltransferase from Arabidopsis thaliana
Nucl. Acids Res. 1993 21: 2383-2388; doi:10.1093/nar/21.10.2383 [Abstract] [Print PDF] [Request Permissions]

GENOME STRUCTURE AND MAPPING:

J. Capel, L.M. Montero, J.M. Martinez-Zapater, and J. Salinas: Non-random distribution of transposable elements in the nuclear genome of plants
Nucl. Acids Res. 1993 21: 2369-2373; doi:10.1093/nar/21.10.2369 [Abstract] [Print PDF] [Request Permissions]

SEQUENCE:

Henrik Ørum, Henrik Nielsen, and Jan Engberg: Sequence and proposed secondary structure of the Tetrahymena thermophila U3-snRNA
Nucl. Acids Res. 1993 21: 2511; doi:10.1093/nar/21.10.2511 [Print PDF] [Request Permissions]

Jan Kormanec and Dagmar Homerova: Streptomyces aureofaciens whiB gene encoding putative transcription factor essential for differentiation
Nucl. Acids Res. 1993 21: 2512; doi:10.1093/nar/21.10.2512 [Print PDF] [Request Permissions]

Minoru Watanabe, Toshiro Hayashida, Takeharu Nishimoto, and Hideki Kobayashi: Nucleotide sequence of Xenopus homeobox gene, En-1
Nucl. Acids Res. 1993 21: 2513; doi:10.1093/nar/21.10.2513 [Print PDF] [Request Permissions]

M. Petrusyte, K. Rudokas, Z. Maneliene, E. Kiuduliene, V. Butkus, and A. Janulaitis: BSP14071, a restriction endonuclease from Bacillus stearothermophilus, which recognizes novel palindromic sequemce 5'-T ${Downarrow}$ GTACA-3'
Nucl. Acids Res. 1993 21: 2514; doi:10.1093/nar/21.10.2514 [Print PDF] [Request Permissions]

Amos Bairoch: A possible mechanism for metal-ion induced DNA-protein dissociation in a family of prokaryotic transcriptional regulators
Nucl. Acids Res. 1993 21: 2515; doi:10.1093/nar/21.10.2515 [Print PDF] [Request Permissions]

David M. Wilson, III, Walter A. Deutsch, and Mark R. Kelley: Cloning of the Drosophila ribosomal protein S3: another multifunctional ribosomal protein with AP endonuclease DNA repair activity
Nucl. Acids Res. 1993 21: 2516; doi:10.1093/nar/21.10.2516 [Print PDF] [Request Permissions]

Antonio Vera and Mamoru Sugita: Nucleotide sequence of three tRNA genes from tomato chloroplast genome
Nucl. Acids Res. 1993 21: 2517; doi:10.1093/nar/21.10.2517 [Print PDF] [Request Permissions]

Michael F. Minnick and Gary L. Stiegler: Nucleotide sequence and comparison of the 5S ribosomal RNA genes of Rochalimaea henselae, R.quintana and Brucella abortus
Nucl. Acids Res. 1993 21: 2518; doi:10.1093/nar/21.10.2518 [Print PDF] [Request Permissions]

J ${euro}$ rgen Schmidt and Alap R. Subramanian: Sequence of the cyanobacterial tRNA^w gene in Synechocystis PCC 6803: requirement of enzymatic 3' CCA attachment to the acceptor stem
Nucl. Acids Res. 1993 21: 2519; doi:10.1093/nar/21.10.2519 [Print PDF] [Request Permissions]

Lubing Zhou, Jesse Pang, Donald G. Munroe, and Catherine Lau: A human retinoic acid receptor gamma isoform is homologous to the murine retinoic acid receptor gamma7
Nucl. Acids Res. 1993 21: 2520; doi:10.1093/nar/21.10.2520 [Print PDF] [Request Permissions]

Eugene V. Koonin and Murray P. Deutscher: RNase T shares conserved sequence motifs with DNA proofreading exonucleases
Nucl. Acids Res. 1993 21: 2521-2522; doi:10.1093/nar/21.10.2521 [Print PDF] [Request Permissions]

Susan L. McNabb and Michael Ashburner: Identification of a Drosophila protein similar to rat S13 and archaebacterial S11 ribosomal proteins
Nucl. Acids Res. 1993 21: 2523; doi:10.1093/nar/21.10.2523 [Print PDF] [Request Permissions]

Marasri Ruengjitchatchawalya, Susumu Okamoto, Takuya Nihira, and Yasuhiro Yamad: Nucleotide sequence of the genes encoding L11 and L1 equivalent ribosomal protein from Streptomyces sp. FRI-5
Nucl. Acids Res. 1993 21: 2524; doi:10.1093/nar/21.10.2524 [Print PDF] [Request Permissions]

STRUCTURAL BIOLOGY:

Shu-Yun Le, Jih-H. Chen, Nahum Sonenberg, and Jacob V. Maizel, Jr: Conserved tertiary structural elements in the 5’ nontranslated region of cardiovirus, aphthovirus and hepatitis A virus RNAs
Nucl. Acids Res. 1993 21: 2445-2451; doi:10.1093/nar/21.10.2445 [Abstract] [Print PDF] [Request Permissions]

Nucleic Acids Research