Nucleic Acids Research

SURVEY AND SUMMARY:

Eugene V. Koonin

A common set of conserved motifs in a vast variety of putative nucleic acid-dependent ATPases including MCM proteins involved in the initiation of eukaryotic DNA replication
Nucl. Acids Res. 1993 21: 2541-2547; doi:10.1093/nar/21.11.2541 [Abstract] [Print PDF] [Request Permissions]  

MOLECULAR BIOLOGY:

A. Martínez-Balbás and F. Azorín

The effect of zinc on the secondary structure of d(GA·TC)_n DNA sequences of different length: a model for the formation *H-DNA
Nucl. Acids Res. 1993 21: 2557-2562; doi:10.1093/nar/21.11.2557 [Abstract] [Print PDF] [Request Permissions]  

H.M. Brereton, F.A. Firgaira, and D.R. Turner

Origins of polymorphism at a polypurine hypervariable locus
Nucl. Acids Res. 1993 21: 2563-2569; doi:10.1093/nar/21.11.2563 [Abstract] [Print PDF] [Request Permissions]  

Barbara E. Withers and Joan C. Dunbar

The endonuclease isoschizomers, SmaI and XmaI, bend DNA in opposite orientations
Nucl. Acids Res. 1993 21: 2571-2577; doi:10.1093/nar/21.11.2571 [Abstract] [Print PDF] [Request Permissions]  

Geir Slupphaug, Finn-Hugo Markussen, Lisbeth C. Olosen, Rein Aasland, Niels Aarsæther, Oddmund Bakke, Hans E. Krokan, and Dag E. Helland

Nuclear and mitochondrial forms of human uracil-DNA glycosylase are encoded by the same gene
Nucl. Acids Res. 1993 21: 2579-2584; doi:10.1093/nar/21.11.2579 [Abstract] [Print PDF] [Request Permissions]  

Diederik C. Zijderveld, Maarten H. Stuiver, and Peter C. van der Vliet

The adenovirus DNA binding protein enhances intermolecular DNA renaturation but inhibits intramolecular DNA renaturation
Nucl. Acids Res. 1993 21: 2591-2598; doi:10.1093/nar/21.11.2591 [Abstract] [Print PDF] [Request Permissions]  

Marcelo Rubinstein, Miguel A. Japón, and Malcolm J. Low

Introduction of a point mutation into the mouse genome by homologous recombination in embryonic stem cells using a replacement type vector with a selectable marker
Nucl. Acids Res. 1993 21: 2613-2617; doi:10.1093/nar/21.11.2613 [Abstract] [Print PDF] [Request Permissions]  

Jining Feng, John Orlowski, and Jerry B. Lingrel

Identification of a functional thyroid hormone response element in the upstream flanking region of the human Na,K-ATPase ß1 gene
Nucl. Acids Res. 1993 21: 2619-2626; doi:10.1093/nar/21.11.2619 [Abstract] [Print PDF] [Request Permissions]  

Christina M. Sax, John G. Iiagan, and Joram Piatigorsky

Functional redundancy of the DE-1 and A-CRYBP1 regulatory sites of the mouse A-crystallin promoter
Nucl. Acids Res. 1993 21: 2633-2640; doi:10.1093/nar/21.11.2633 [Abstract] [Print PDF] [Request Permissions]  

Christopher Barker, Antonios Makris, Christos Patriotis, Susan E. Bear, and Philip N. Tsichlis

Identification of the gene encoding the mitochondrial elongation factor G in mammals
Nucl. Acids Res. 1993 21: 2641-2647; doi:10.1093/nar/21.11.2641 [Abstract] [Print PDF] [Request Permissions]  

Chisato Ushida and Akira Muto

A small RNA of Mycoplasma capricolum that resembles eukaryotic U6 small nuclear RNA
Nucl. Acids Res. 1993 21: 2649-2653; doi:10.1093/nar/21.11.2649 [Abstract] [Print PDF] [Request Permissions]  

Ranjan Mukherjee

Selective binding of the estrogen receptor to one strand of the estrogen responsive element
Nucl. Acids Res. 1993 21: 2655-2661; doi:10.1093/nar/21.11.2655 [Abstract] [Print PDF] [Request Permissions]  

Anthony D. Radice and Scott W. Emmons

Extrachromosomal circular copies of the transposon Tc1
Nucl. Acids Res. 1993 21: 2663-2667; doi:10.1093/nar/21.11.2663 [Abstract] [Print PDF] [Request Permissions]  

Jacky Schmitt and Hendrik G. Stunnenberg

The glucocorticoid receptor hormone binding domain mediates transcriptional activation in vitro in the absence of ligand
Nucl. Acids Res. 1993 21: 2673-2681; doi:10.1093/nar/21.11.2673 [Abstract] [Print PDF] [Request Permissions]  

Yong-Soo Bae, Yup Kang, Eiko Ohtsuka, and Ji-Won Yoon

Development of a recombinant RNA technique for the construction of chimeric RNA with a long poly(C) tract
Nucl. Acids Res. 1993 21: 2703-2708; doi:10.1093/nar/21.11.2703 [Abstract] [Print PDF] [Request Permissions]  

Tetsuo Yoshida, Takehisa Suzuki, Hironori Sato, Hiroshi Nishina, and Hideo Iba

Analysis of fra-2 gene expression
Nucl. Acids Res. 1993 21: 2715-2721; doi:10.1093/nar/21.11.2715 [Abstract] [Print PDF] [Request Permissions]  

Drew A. Sukovich, Junaid Shabbeer, and Muthu Periasamy

Analysis of the rabbit cardiac/slow twitch muscle sarcoplasmic reticulum calcium ATPase (SERCA2) gene promoter
Nucl. Acids Res. 1993 21: 2723-2728; doi:10.1093/nar/21.11.2723 [Abstract] [Print PDF] [Request Permissions]  

Sathyamangalam Swaminathan, Pawan Malhotra, Chitra F. Manohar, Ravi Dhar, and Bayar Thimmapaya

Activation of a dual adenovirus promoter containing nonconsensus TATA motifs in Schizosaccharomyces pombe: role of TATA sequences in the efficiency of transcription
Nucl. Acids Res. 1993 21: 2737-2746; doi:10.1093/nar/21.11.2737 [Abstract] [Print PDF] [Request Permissions]  

Y.E. Khudyakov, H.A. Fields, M.O. Favorov, N.S. Khudyakova, M.-T. Bonafonte, and B. Holloway

Synthetic gene for the hepatitis C virus nucleocapsid protein
Nucl. Acids Res. 1993 21: 2747-2754; doi:10.1093/nar/21.11.2747 [Abstract] [Print PDF] [Request Permissions]  

Chaim O. Jacob and Nancy Beerman Tashman

Disruption in the AU motif of the mouse TNF- 3' UTR correlates with reduced TNF production by macrophages in vitro
Nucl. Acids Res. 1993 21: 2761-2766; doi:10.1093/nar/21.11.2761 [Abstract] [Print PDF] [Request Permissions]  

CHEMISTRY:

Karl P. Nightingale and Keith R. Fox

DNA structure influences sequence specific cleavage by bleomycin
Nucl. Acids Res. 1993 21: 2549-2555; doi:10.1093/nar/21.11.2549 [Abstract] [Print PDF] [Request Permissions]  

Michael Y.-X.Ma, Kirk McCallum, Shane C. Climie, Raya Kuperman, Wing C. Lin, Martin Sumner-Smith, and Richard W. Barnett

Design and synthesis of RNA miniduplexes via a synthetic linker approach. 2. Generation of covalently closed, double-stranded cyclic HIV-1 TAR RNA analogs with high Tat-binding affinity
Nucl. Acids Res. 1993 21: 2585-2589; doi:10.1093/nar/21.11.2585 [Abstract] [Print PDF] [Request Permissions]  

Dionisios Rentzeperis, Karen Alessi, and Luis A. Marky

Thermodynamics of DNA hairpins: contribution of loop size to hairpin stability and ethidium binding
Nucl. Acids Res. 1993 21: 2683-2689; doi:10.1093/nar/21.11.2683 [Abstract] [Print PDF] [Request Permissions]  

Vadim V. Demidov and Vladimir N. Potaman

HPLC photofingerprinting of conformational peculiarities and transitions in oligonucleotide duplexes
Nucl. Acids Res. 1993 21: 2691-2696; doi:10.1093/nar/21.11.2691 [Abstract] [Print PDF] [Request Permissions]  

Jin yan Tang, Jamal Temsamani, and Sudhir Agrawal

Self-stabilized antisense oligodeoxynucleotide phosphorothioates: properties and anti-HIV activity
Nucl. Acids Res. 1993 21: 2729-2735; doi:10.1093/nar/21.11.2729 [Abstract] [Print PDF] [Request Permissions]  

Jong-Ki Kim, Sunil-Datta Soni, John C. Wallace, and James L. Alderfer

Solution structure of nucleic acid photoadduct, deoxy-m⁵HO⁶-uridylyl(5-5)(3'-5')deoxyuridine by NMR and restrained molecular dynamics
Nucl. Acids Res. 1993 21: 2755-2759; doi:10.1093/nar/21.11.2755 [Abstract] [Print PDF] [Request Permissions]  

METHODS:

David I. Israel

A PCR-based method for high stringency screening of DNA libraries
Nucl. Acids Res. 1993 21: 2627-2631; doi:10.1093/nar/21.11.2627 [Abstract] [Print PDF] [Request Permissions]  

Alan G. Herbert and Alexander Rich

A method to identify and characterize Z-DNA binding proteins using a linear oligodeoxynucleotide
Nucl. Acids Res. 1993 21: 2669-2672; doi:10.1093/nar/21.11.2669 [Abstract] [Print PDF] [Request Permissions]  

Samantha Li, Alberto Haces, Linda Stupar, Gulilat Gebeyehu, and Reynaldo C. Pless

Elimination of band compression in sequencing gels by the use of N⁴-methyl-2'-deoxycytidine 5'-triphosphate
Nucl. Acids Res. 1993 21: 2709-2714; doi:10.1093/nar/21.11.2709 [Abstract] [Print PDF] [Request Permissions]  

Licen Xu, Walter Schaffner, and Duri Rungger

Transcriptional activation by recombinant GAL4-VP16 in the Xenopus oocyte
Nucl. Acids Res. 1993 21: 2775; doi:10.1093/nar/21.11.2775 [Print PDF] [Request Permissions]  

Shigenori Sonoki, Shin Hisamatsu, and Akio Kiuchi

High-performance liquid chromatographic determination of DNA base composition with fluorescence detection
Nucl. Acids Res. 1993 21: 2776; doi:10.1093/nar/21.11.2776 [Print PDF] [Request Permissions]  

Johnson Y.N. Lau, Ke-Ping Qian, P.C. Wu, and Gary L. Davis

Ribonucleotide vanadyl complexes inhibit polymerase chain reaction
Nucl. Acids Res. 1993 21: 2777; doi:10.1093/nar/21.11.2777 [Print PDF] [Request Permissions]  

Darja Kanduc

tRNA fractionation by HPLC
Nucl. Acids Res. 1993 21: 2778; doi:10.1093/nar/21.11.2778 [Print PDF] [Request Permissions]  

Jean-Pierre Quivy and Peter B. Becker

An improved protocol for genomic sequencing and footprinting by ligation-mediated PCR
Nucl. Acids Res. 1993 21: 2779-2781; doi:10.1093/nar/21.11.2779 [Print PDF] [Request Permissions]  

Masato Kobori and Hiroshi Nojima

A simple treatment of DNA in a ligation mixture prior to electroporation improves transformation frequency
Nucl. Acids Res. 1993 21: 2782; doi:10.1093/nar/21.11.2782 [Print PDF] [Request Permissions]  

Roger Pellé and Noel B. Murphy

Northern hybridization: rapid and simple electrophoretic conditions
Nucl. Acids Res. 1993 21: 2783-2784; doi:10.1093/nar/21.11.2783 [Print PDF] [Request Permissions]  

Errata:

P.G. Fattal and J.J. Billadello

Species-specific differential cleavage and polyadenylation of plasminogen activator inhibitor type 1 hnRNA
Nucl. Acids Res. 1993 21: 2786; doi:10.1093/nar/21.11.2786 [Abstract] [Print PDF] [Request Permissions]  

N. Masson, H.C. Hurst, and K.A.W. Lee

Identification of proteins that interact with CREB during differentiation of F9 embryonal carcinoma cells
Nucl. Acids Res. 1993 21: 2786; doi:10.1093/nar/21.11.2786-a [Abstract] [Print PDF] [Request Permissions]  

Author index:

Author index
Nucl. Acids Res. 1993 21: 2785; doi:10.1093/nar/21.11.2785 [Print PDF] [Request Permissions]  

ENZYMOLOGY:

Michael D. Topal and Michael Conrad

Changing endonuclease EcoRII Tyr308 to Phe abolishes cleavage but not recognition: possible homology with the int-family of recombinases
Nucl. Acids Res. 1993 21: 2599-2603; doi:10.1093/nar/21.11.2599 [Abstract] [Print PDF] [Request Permissions]  

GENOME STRUCTURE AND MAPPING:

John G.K. Williams, Robert S. Reiter, Roslyn M. Young, and Pablo A. Scolnik

Genetic mapping of mutations using phenotypic pools and mapped RAPD markers
Nucl. Acids Res. 1993 21: 2697-2702; doi:10.1093/nar/21.11.2697 [Abstract] [Print PDF] [Request Permissions]  

SEQUENCE:

Won Kim, Chang Bae Kim, Gi Sik Min, and Sang Hee Kim

The nucleotide sequences of 18S ribosomal RNA gene of a crustacean cumacean, Diastylis sp.
Nucl. Acids Res. 1993 21: 2767; doi:10.1093/nar/21.11.2767 [Print PDF] [Request Permissions]  

David Prangishvili and Hans-Peter Klenk

Nucleotide sequence of the gene for a 74 kDa DNA polymerase from the archaeon Sulfolobus solfataricus
Nucl. Acids Res. 1993 21: 2768; doi:10.1093/nar/21.11.2768 [Print PDF] [Request Permissions]  

Kohsuke Sumita, Yasutaka Makino, Koh Katoh, Toshihiko Kishimoto, Masami Muramatsu, Katsuhiko Mikoshiba, and Taka-aki Tamura

Structure of a mammalian TBP (TATA-binding protein) gene: isolation of the mouse TBP genome
Nucl. Acids Res. 1993 21: 2769; doi:10.1093/nar/21.11.2769 [Print PDF] [Request Permissions]  

Gábor Jakab, Mihály Kis, Tamás Pollák, and Ferenc Solymosy

Nucleotide sequence of cytoplasmic 5S rRNA from a eukaryotic thermophilic unicellular alga, Cyanidium caldarium
Nucl. Acids Res. 1993 21: 2770; doi:10.1093/nar/21.11.2770 [Print PDF] [Request Permissions]  

M.J.B. Rodriguez and J.W. Randles

Coconut cadang-cadang viroid (CCCVd) mutants associated with severe disease vary in both the pathogenicity domain and the central conserved region
Nucl. Acids Res. 1993 21: 2771; doi:10.1093/nar/21.11.2771 [Print PDF] [Request Permissions]  

Emmanuel J. Payen and Corinne Y. Cotinot

Comparative HMG-box sequences of the SRY gene between sheep, cattle and goats
Nucl. Acids Res. 1993 21: 2772; doi:10.1093/nar/21.11.2772 [Print PDF] [Request Permissions]  

Alberto J.L. Macario, Charles B. Dugan, Manuel Clarens, and Everly Conway de Macario

dnaJ in Archaea
Nucl. Acids Res. 1993 21: 2773; doi:10.1093/nar/21.11.2773 [Print PDF] [Request Permissions]  

S. Ruiz-Lara, E. Prats, M.T. Casas, and L. Cornudella

Molecular cloning and sequence of a cDNA for the sperm-specific protein 1 from the mussel Mytilus edulis
Nucl. Acids Res. 1993 21: 2774; doi:10.1093/nar/21.11.2774 [Print PDF] [Request Permissions]  

STRUCTURAL BIOLOGY:

Takashi Shimayama, Fumiko Nishikawa, Satoshi Nishikawa, and Kazunari Taira

Nuclease-resistant chimeric ribozymes containing deoxyribonucleotides and phosphorothioate linkages
Nucl. Acids Res. 1993 21: 2605-2611; doi:10.1093/nar/21.11.2605 [Abstract] [Print PDF] [Request Permissions]  

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