Nucl. Acids Res. -- Table of Contents (21 [15, July 25 1993])

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Contents: Volume 21, Number 15    25 July 1993    [Index by Author]

       MOLECULAR BIOLOGY

       CHEMISTRY

       METHODS

       Corrigendum

       Author index

       ENZYMOLOGY

       GENOME STRUCTURE AND MAPPING

       SEQUENCE

       STRUCTURAL BIOLOGY

Other Issues:

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MOLECULAR BIOLOGY:

Yen Choo and Aaron Klug: A role in DNA binding for the linker sequences of the first three zinc fingers of TFIIIA
Nucl. Acids Res. 1993 21: 3341-3346; doi:10.1093/nar/21.15.3341 [Abstract] [Print PDF] [Request Permissions]

Gary J. Sharples and Robert G. Lloyd: An E.coli RuvC mutant defective in cleavage of synthetic Holliday junctions
Nucl. Acids Res. 1993 21: 3359-3364; doi:10.1093/nar/21.15.3359 [Abstract] [Print PDF] [Request Permissions]

Janet S. Lee, Dietmar von der Ahe, Birgitta Kiefer, and Yoshikuni Nagamine: Cytoskeletal reorganization and TPA differently modify AP-1 to induce the urokinase-type plasminogen activator gene in LLC-PK₁ cells
Nucl. Acids Res. 1993 21: 3365-3372; doi:10.1093/nar/21.15.3365 [Abstract] [Print PDF] [Request Permissions]

Dik C. van Gent, Antoinette A. M. Oude Groeneger, and Ronald H. A. Plasterk: Identification of amino acids in HIV-2 integrase involved in site-specific hydrolysis and alcoholysis of viral DNA termini
Nucl. Acids Res. 1993 21: 3373-3377; doi:10.1093/nar/21.15.3373 [Abstract] [Print PDF] [Request Permissions]

Gordon B. Hutchinson, Susan E. Andrew, Helen McDonald, Y.Paul Goldberg, Rona Graham, Johanna M. Rommens, and Michael R. Hayden: An Alu element retroposition in two families with Huntington disease defines a new active Alu subfamily
Nucl. Acids Res. 1993 21: 3379-3383; doi:10.1093/nar/21.15.3379 [Abstract] [Print PDF] [Request Permissions]

Greet Bolm van Assendelft, Elizabeth M. Rigney, and lan D. Hickson: Purification of a HeLa cell nuclear protein that binds selectively to DNA irradiated with ultra-violet light
Nucl. Acids Res. 1993 21: 3399-3404; doi:10.1093/nar/21.15.3399 [Abstract] [Print PDF] [Request Permissions]

Catherine Clusel, Edgardo Ugarte, Nathalie Enjolras, Marc Vasseur, and Marta Blumenfeld: Ex vivo regulation of specific gene expression by nanomolar concentration of double-stranded dumbbell oligonucleotides
Nucl. Acids Res. 1993 21: 3405-3411; doi:10.1093/nar/21.15.3405 [Abstract] [Print PDF] [Request Permissions]

Jong G. Na and Michael Hampsey: The Kluyveromyces gene encoding the general transcription factor IIB: structural analysis and expression in Saccharomyces cerevisiae
Nucl. Acids Res. 1993 21: 3413-3417; doi:10.1093/nar/21.15.3413 [Abstract] [Print PDF] [Request Permissions]

Genadij Ermark, Uta Paszkowski, Markus Wohlmuth, Orturn Mittlesten Scheid, and Jerzy Paszkowski: Cytosine methylation inhibits replication of African cassava mosaic virus by two distinct mechanisms
Nucl. Acids Res. 1993 21: 3445-3450; doi:10.1093/nar/21.15.3445 [Abstract] [Print PDF] [Request Permissions]

Susan C. Baston, Sylvie Rimsky, Rebecca Sundseth, and Ulla Hansen: Association of nucleosome-free regions and basal transcription factors with in vivo-assembled chromatin templates active in vitro
Nucl. Acids Res. 1993 21: 3459-3468; doi:10.1093/nar/21.15.3459 [Abstract] [Print PDF] [Request Permissions]

Xin-Jie Chen, Min-Xin Guan, and G. Desmond Clark-Walker: MGM101, a nuclear gene involved in maintenance of the mitochondrial genome in Saccharomyces cerevisiae
Nucl. Acids Res. 1993 21: 3473-3477; doi:10.1093/nar/21.15.3473 [Abstract] [Print PDF] [Request Permissions]

Bernard M. Degnan, Sandie M. Degnan, Takeshi Naganuma, and Daniel E. Morse: The ets multigene family is conserved throughout the Metazoa
Nucl. Acids Res. 1993 21: 3479-3484; doi:10.1093/nar/21.15.3479 [Abstract] [Print PDF] [Request Permissions]

Brian C. Rymond, Luis A. Rokeach, and Sallie O. Hoch: Human snRNP polypeptide D1 promotes pre-mRNA splicing in yeast and defines nonessential yeast Smd1p sequences
Nucl. Acids Res. 1993 21: 3501-3505; doi:10.1093/nar/21.15.3501 [Abstract] [Print PDF] [Request Permissions]

Amy M. Woerner and Carol J. Marcus-Sekura: Characterization of a DNA binding domain in the C-terminus of HIV-1 integrase by deletion mutagenesis
Nucl. Acids Res. 1993 21: 3507-3511; doi:10.1093/nar/21.15.3507 [Abstract] [Print PDF] [Request Permissions]

Pascale Pochart, Bernadette Agoutin, Solange Rousset, Roland Chanet, Vlodimierz Doroszkiewicz, and Thérèse Heyman: Biochemical and electron microscope analyses of the DNA reverse transcripts present in the virus-like particles of the yeast transposon Ty1. Identification of a second origin of Ty1DNA plus strand synthesis
Nucl. Acids Res. 1993 21: 3513-3520; doi:10.1093/nar/21.15.3513 [Abstract] [Print PDF] [Request Permissions]

Wolf-Dietrich Hardt, Judith Schlegl, Volker A. Erdmann, and Roland K. Hartmann: Gel retardation analysis of E.coli M1 RNA-tRNA complexes
Nucl. Acids Res. 1993 21: 3521-3527; doi:10.1093/nar/21.15.3521 [Abstract] [Print PDF] [Request Permissions]

Pavel V. Sergeev, Grigorii N. Yenikolopov, Natalia I. Peunova, Boris A. Kuzin, Ruben A. Khechumian, Leonid I. Korochkin, and Georgii P. Georgiev: Regulation of tissue-specific expression of the esterase S gene in Drosophila virilis
Nucl. Acids Res. 1993 21: 3545-3551; doi:10.1093/nar/21.15.3545 [Abstract] [Print PDF] [Request Permissions]

Valeri G. Kossykh, Samuel L. Schlagman, and Stanley Hattman: Conserved sequence motif DPPY in region IV of the phage T4 Dam DNA-[N⁶-adenine]-methyltransferase is important for S-adenosyl-L-methionine binding
Nucl. Acids Res. 1993 21: 3563-3566; doi:10.1093/nar/21.15.3563 [Abstract] [Print PDF] [Request Permissions]

Raymond Bergan, Yvette Connell, Brigid Fahmy, and Leonard Neckers: Electroporation enhances c-myc antisense oligodeoxynucleotide efficacy
Nucl. Acids Res. 1993 21: 3567-3573; doi:10.1093/nar/21.15.3567 [Abstract] [Print PDF] [Request Permissions]

CHEMISTRY:

E. Louise Hancox, Bernard A. Connolly, and Richard T. Walker: Synthesis and properties of oligodeoxynucleotides containing the analogue 2'-deoxy-4'-thiothemidine
Nucl. Acids Res. 1993 21: 3485-3491; doi:10.1093/nar/21.15.3485 [Abstract] [Print PDF] [Request Permissions]

W. H. A. Kuijpers, E. Kuyl-Yeheskiely, J. H.van Boom, and C. A. A.van Boeckel: The application of the AMB protective group in the solidphase synthesis of methylphosphonate DNA analogues
Nucl. Acids Res. 1993 21: 3493-3500; doi:10.1093/nar/21.15.3493 [Abstract] [Print PDF] [Request Permissions]

METHODS:

E. Nordhoff, R. Cramer, M. Karas, F. Hillenkamp, F. Kirpekar, K. Kristiansen, and P. Roepstorff: Ion stability of nucleic acids in infrared matrix-assisted laser desorption/ionization mass spectrometry
Nucl. Acids Res. 1993 21: 3347-3357; doi:10.1093/nar/21.15.3347 [Abstract] [Print PDF] [Request Permissions]

Valerie Burland, Donna L. Daniels, Guy Plunkett, III, and Frederick R. Blattner: Genome sequencing on both strands: the Janus strategy
Nucl. Acids Res. 1993 21: 3385-3390; doi:10.1093/nar/21.15.3385 [Abstract] [Print PDF] [Request Permissions]

Zdenek Sedlacek, David S. Konecki, Renate Siebenhaar, Petra Kioschis, and Annemarie Poustka: Direct selection of DNA sequences conserved between species
Nucl. Acids Res. 1993 21: 3419-3425; doi:10.1093/nar/21.15.3419 [Abstract] [Print PDF] [Request Permissions]

Theo D. Palmer, A.Dusty Miller, Ronald H. Reeder, and Brian McStay: Efficient expression of a protein coding gene under the control of an RNA polymerase I promoter
Nucl. Acids Res. 1993 21: 3451-3457; doi:10.1093/nar/21.15.3451 [Abstract] [Print PDF] [Request Permissions]

Hitoshi Kohsaka, Atsuo Taniguchi, Douglas D. Richman, and Dennis A. Carson: Microtiter format gene quantification by covalent capture of competitive PCR products: application to HIV-1 detection
Nucl. Acids Res. 1993 21: 3469-3472; doi:10.1093/nar/21.15.3469 [Abstract] [Print PDF] [Request Permissions]

Kaoru Yoshida, Michael P. Strathmann, Carol A. Mayeda, Christopher H. Martin, and Michael J. Palazzolo: A simple and efficient method for constructing high resolution physical maps
Nucl. Acids Res. 1993 21: 3553-3562; doi:10.1093/nar/21.15.3553 [Abstract] [Print PDF] [Request Permissions]

Miranda Mirfakhrai and Alan M. Weiner: Chemical Cleveland mapping: a rapid technique for characterization of crosslinked nucleic acid-protein complexes
Nucl. Acids Res. 1993 21: 3591-3592; doi:10.1093/nar/21.15.3591 [Print PDF] [Request Permissions]

Jonathan Silver, Thomas Maudru, Kazunobu Fujita, and Roy Repaske: An RT-PCR assay for the enzyme activity of reverse transcriptase capable of detecting single virions
Nucl. Acids Res. 1993 21: 3593-3594; doi:10.1093/nar/21.15.3593 [Print PDF] [Request Permissions]

Nicoletta Bianchi, Carlo Mischiati, Giordane Feriotto, and Roberto Gambari: Polymerase-chain reaction: analysis of DNA/DNA hybridization by capillary electrophoresis
Nucl. Acids Res. 1993 21: 3595-3596; doi:10.1093/nar/21.15.3595 [Print PDF] [Request Permissions]

J. Hirzmann, D. Luo, J. Hahnen, and G. Hobom: Determination of messenger RNA 5'-ends by reverse transcription of the cap structure
Nucl. Acids Res. 1993 21: 3597-3598; doi:10.1093/nar/21.15.3597 [Print PDF] [Request Permissions]

Mark Dowton and Andrew D. Austin: Direct sequencing of double-stranded PCR products without intermediate fragment purification; digestion with mung bean nuclease
Nucl. Acids Res. 1993 21: 3599-3600; doi:10.1093/nar/21.15.3599 [Print PDF] [Request Permissions]

Peter Bubeck, Monica Winkler, and Wilfried Bautsch: Rapid cloning by homologous recombination in vivo
Nucl. Acids Res. 1993 21: 3601-3602; doi:10.1093/nar/21.15.3601 [Print PDF] [Request Permissions]

Wolfgang Dietmaier, Stefan Fabry, and Rüdiger Schmitt: DISEC-TRISEC: di- and trinucleotide-sticky-end cloning of PCR-amplified DNA
Nucl. Acids Res. 1993 21: 3603-3604; doi:10.1093/nar/21.15.3603 [Print PDF] [Request Permissions]

Corrigendum:

Da-Wei Gong, Shigeru Hashimoto, Keiji Wada, R. G. Roeder, Y. Nakatani, and Masami Horikoshi: Imperfect conservation of a sigma factor-like subregion in Xenopus general transcription factor RAP30
Nucl. Acids Res. 1993 21: 3606; doi:10.1093/nar/21.15.3606 [Abstract] [Print PDF] [Request Permissions]

Author index:

: Author index
Nucl. Acids Res. 1993 21: 3605; doi:10.1093/nar/21.15.3605 [Print PDF] [Request Permissions]

ENZYMOLOGY:

Pallavi Devchand, James D. McGhee, and John H. van de Sande: Uracil-DNA glycosylase as a probe for protein-DNA interactions
Nucl. Acids Res. 1993 21: 3437-3443; doi:10.1093/nar/21.15.3437 [Abstract] [Print PDF] [Request Permissions]

GENOME STRUCTURE AND MAPPING:

Guy Plunkett, III, Valerie Burland, Donna L. Daniels, and Frederick R. Blattner: Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes
Nucl. Acids Res. 1993 21: 3391-3398; doi:10.1093/nar/21.15.3391 [Abstract] [Print PDF] [Request Permissions]

Andrea D. Branch, Susan E. Lee, Olivia D. Neel, and Hugh D. Robertson: Prominent polypurine and polypyrimidine tracts in plant viroids and in RNA of the human hepatitis delta agent
Nucl. Acids Res. 1993 21: 3529-3535; doi:10.1093/nar/21.15.3529 [Abstract] [Print PDF] [Request Permissions]

Richard B. Hallick, Ling Hong, Robert G. Drager, Mitchell R. Favreau, Amparo Monfort, Bernard Orsat, Albert Spielmann, and Erhard Stutz: Complete sequence of Euglena gracilis chloroplast DNA
Nucl. Acids Res. 1993 21: 3537-3544; doi:10.1093/nar/21.15.3537 [Abstract] [Print PDF] [Request Permissions]

SEQUENCE:

Birgit L. Aerne, Christine D. Baader, Volker Schmid, and Peter Schuchert: Characterization of a cDNA encoding ribosomal protein S5 from the hydrozoan Podocoryne carnea
Nucl. Acids Res. 1993 21: 3575; doi:10.1093/nar/21.15.3575 [Print PDF] [Request Permissions]

Dominique Chardard, Amand Chesnel, Catherine Gozé, Christian Dournon, and Philippe Berta: Pw Sox-1: the first member of the Sox gene family in Urodeles
Nucl. Acids Res. 1993 21: 3576; doi:10.1093/nar/21.15.3576 [Print PDF] [Request Permissions]

Paul M. Sharp and Kenneth H. Wolfe: Identification of a Candida utilis gene encoding ribosomal protein L7: evidence for two divergent subclasses of the eukaryotic ribosomal protein L7 family
Nucl. Acids Res. 1993 21: 3577; doi:10.1093/nar/21.15.3577 [Print PDF] [Request Permissions]

Susumu Itoh and Tetsuya Kamataki: Human Ah receptor cDNA: analysis for highly conserved sequences
Nucl. Acids Res. 1993 21: 3578; doi:10.1093/nar/21.15.3578 [Print PDF] [Request Permissions]

Naoya Ohara, Makoto Kimura, Naoko Wada, and Takeshi Yamada: Cloning and sequencing of the gene encoding the ribosomal L7/L12-like protein of Mycobacterium bovis BCG
Nucl. Acids Res. 1993 21: 3579; doi:10.1093/nar/21.15.3579 [Print PDF] [Request Permissions]

Richard C. Barnard, John C. Pascall, Kenneth D. Brown, Ian A. McKay, Norman S. Williams, and Stephen A. Bustin: Coding sequence of ERF-1, the human homologue of Tis11b/cMG1, members of the Tis11 family of early response genes
Nucl. Acids Res. 1993 21: 3580; doi:10.1093/nar/21.15.3580 [Print PDF] [Request Permissions]

J. P. Marques, J. M. Gualberto, and K. Palme: Sequence of the Arabidopsis thaliana 7SL RNA gene
Nucl. Acids Res. 1993 21: 3581; doi:10.1093/nar/21.15.3581 [Print PDF] [Request Permissions]

J. Felsberg, M. Petricek, and P. Tichy: Nucleotide sequence of the mini-plasmid pSLG33 from Streptomyces lavendulae-grasserius RIA746
Nucl. Acids Res. 1993 21: 3582; doi:10.1093/nar/21.15.3582 [Print PDF] [Request Permissions]

Won Kim, Seong Myeong Yoon, and Jihee Kim: The 18S ribosomal RNA gene of a crustacean branchiopod Bosmina longirostris: comparison with another branchiopod Artemia salina
Nucl. Acids Res. 1993 21: 3583; doi:10.1093/nar/21.15.3583 [Print PDF] [Request Permissions]

Flavia Pernasetti, Stefaan Wera, Alexandra Belayew, and Joseph A. Martial: Cloning of a human GHF-1/Pit-1 cDNA variant
Nucl. Acids Res. 1993 21: 3584; doi:10.1093/nar/21.15.3584 [Print PDF] [Request Permissions]

Roohi Mushtaq, Shahid Naeem, Anjum Sohail, and Sheikh Riazuddin: BseRI a novel restriction endonuclease from a Bacillus species which recognizes the sequence 5' ...GAGGAG...3'
Nucl. Acids Res. 1993 21: 3585; doi:10.1093/nar/21.15.3585 [Print PDF] [Request Permissions]

Loren J. Hauser, Mary L. Treat, and Donald E. Olins: Cloning and analysis of the macronuclear gene for histone H1 from Euplotes eurystomus
Nucl. Acids Res. 1993 21: 3586; doi:10.1093/nar/21.15.3586 [Print PDF] [Request Permissions]

G. A. Durrheim, V. A. Corfield, E. H. Harley, and M. H. Ricketts: Nucleotide sequence of cytochrome oxidase (subunit III) from the mitochondrion of the tunicate Pyura stolonifera: evidence that AGR encodes glycine
Nucl. Acids Res. 1993 21: 3587-3588; doi:10.1093/nar/21.15.3587 [Print PDF] [Request Permissions]

Takayuki Sekito, Kozi Okamoto, Katsunori Suzuki, and Kazuo Yoshida: Nucleotide sequences and secondary structures of four tRNA genes in mitochondrial DNA of Hansenula wingei yeast
Nucl. Acids Res. 1993 21: 3589; doi:10.1093/nar/21.15.3589 [Print PDF] [Request Permissions]

STRUCTURAL BIOLOGY:

Christopher M. Read, Peter D. Cary, Colyn Crane-Robinson, Paul C. Driscoll, and David G. Norman: Solution structure of a DNA-binding domain from HMG1
Nucl. Acids Res. 1993 21: 3427-3436; doi:10.1093/nar/21.15.3427 [Abstract] [Print PDF] [Request Permissions]

Nucleic Acids Research