Nucl. Acids Res. -- Table of Contents (21 [19, September 25 1993])

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Contents: Volume 21, Number 19    25 September 1993    [Index by Author]

       COMPUTATIONAL BIOLOGY

       MOLECULAR BIOLOGY

       RNA

       CHEMISTRY

       METHODS

       Author index

       CORRIGENDUM

       ENZYMOLOGY

       GENOME STRUCTURE AND MAPPING

       ORIGINAL ARTICLES

       SEQUENCE

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COMPUTATIONAL BIOLOGY:

Michael C. Giddings, Robert L. Brumley, Jr, Michael Haker, and Lloyd M. Smith: An adaptive, object oriented strategy for base calling in DNA sequence analysis
Nucl. Acids Res. 1993 21: 4530-4540; doi:10.1093/nar/21.19.4530 [Abstract] [Print PDF] [Request Permissions]

MOLECULAR BIOLOGY:

Agnes Abadjieva, Jay Patel, Michelle Webb, Vitaly Zinkevich, and Keith Firman: A deletion mutant of the type IC restriction endonuclease EcoR124l expressing a novel DNA specificity
Nucl. Acids Res. 1993 21: 4435-4443; doi:10.1093/nar/21.19.4435 [Abstract] [Print PDF] [Request Permissions]

Bhaya Devaki and Arthur R. Grossman: Characterization of gene clusters encoding the fucoxanthin chlorophyll proteins of the diatom Phaeodactylum tricornutum
Nucl. Acids Res. 1993 21: 4458-4466; doi:10.1093/nar/21.19.4458 [Abstract] [Print PDF] [Request Permissions]

R.I. Tapping, D.E Syroid, P.T. Bilan, and J.P Capone: The 5' flanking sequence negatively modulates the in vivo expression and in vitro transcription of a human tRNA gene
Nucl. Acids Res. 1993 21: 4476-4482; doi:10.1093/nar/21.19.4476 [Abstract] [Print PDF] [Request Permissions]

Henrik ørum, Peter S. Andersen, Anne øster, Lene K. Johansen, Erik Riise, Mads Bjørnvad, Ivan Svendsen, and Jan Engberg: Efficient method for construction comprehensive murine Fab antibody libraries displayed on phage
Nucl. Acids Res. 1993 21: 4491-4498; doi:10.1093/nar/21.19.4491 [Abstract] [Print PDF] [Request Permissions]

Peter J. Morris, Christopher J.A. Ring, Karen A. Lillycrop, and David S. Latchman: Transactivation of the human papilloma virus 16 octamer motif by the octamer binding protein Oct-2 requires both the N and C terminal activation domains
Nucl. Acids Res. 1993 21: 4506-4510; doi:10.1093/nar/21.19.4506 [Abstract] [Print PDF] [Request Permissions]

James R. Matthews, Elizabeth Watson, Sarah Buckley, and Ronald T. Hay: Interaction of the C-terminal region of p105 with the nuclear localisation signal of p50 is required for inhinition of NF- ${varkappa}$ B binding activity
Nucl. Acids Res. 1993 21: 4516-4523; doi:10.1093/nar/21.19.4516 [Abstract] [Print PDF] [Request Permissions]

Jonathan B. Welch, Derek R. Duckett, and David M.J. Lilley: Structures of bulged three-way DNA junctions
Nucl. Acids Res. 1993 21: 4548-4555; doi:10.1093/nar/21.19.4548 [Abstract] [Print PDF] [Request Permissions]

Mrinal K. Bhattacharjee and Richard J. Meyer: Specific binding of MobA, a plasmid-encoded protein involved in the initiation and termination of conjugal DNA transfer, to single-stranded oriT DNA
Nucl. Acids Res. 1993 21: 4563-4568; doi:10.1093/nar/21.19.4563 [Abstract] [Print PDF] [Request Permissions]

Daan F.R. Muris, Kees vreeken, Antony M. Carr, Bernard C. Broghton, Alan R. Lehmann, Paul H.M. Lohman, and Albert Pastink: Cloning the RAD51 homologue of Schizosaccharomyces pombe
Nucl. Acids Res. 1993 21: 4586-4591; doi:10.1093/nar/21.19.4586 [Abstract] [Print PDF] [Request Permissions]

Ronald T. Hay and John Nicholson: DNA binding alters the protease susceptibility of the p50 subunit of NF- ${varkappa}$ B
Nucl. Acids Res. 1993 21: 4592-4598; doi:10.1093/nar/21.19.4592 [Abstract] [Print PDF] [Request Permissions]

Adam Eyre-Walker and Michael Bulmer: Reduced synonymous substitution rate at the start of enterobacterial genes
Nucl. Acids Res. 1993 21: 4599-4603; doi:10.1093/nar/21.19.4599 [Abstract] [Print PDF] [Request Permissions]

Frances M. Taylor and Duane W. Martindale: Retroviral-type zinc fingers and glycine-rich repeats in a protein encoded by CAT2.urule;6, a Tetrahymena gene active during meiosis
Nucl. Acids Res. 1993 21: 4610-4614; doi:10.1093/nar/21.19.4610 [Abstract] [Print PDF] [Request Permissions]

Richard Morgan, Michael Edge, and Alan Colman: A more efficient and specific strategy in the ablation of mRNA in Xenopus laevis using mixtures of antisense oligos
Nucl. Acids Res. 1993 21: 4615-4620; doi:10.1093/nar/21.19.4615 [Abstract] [Print PDF] [Request Permissions]

Sonia Pearson-White: Snol, a novel alternatively spliced isoform of the ski protooncogene homolog, sno
Nucl. Acids Res. 1993 21: 4632-4638; doi:10.1093/nar/21.19.4632 [Abstract] [Print PDF] [Request Permissions]

RNA:

Jane A. Grasby, P. Jonathan, G. Butler, and J.Gait Michael: The synthesis of oligoribonucleotides containing O⁶-methylguanosine: the role of conserved guanosine residues in hammerhead ribozyme cleavage
Nucl. Acids Res. 1993 21: 4444-4450; doi:10.1093/nar/21.19.4444 [Abstract] [Print PDF] [Request Permissions]

Tyson V. Sharp, Martin Schwemmle, Ian Jeffrey, Kenneth Laing, Harry Mellor, Christopher G. Proud, Kurt Hilse, and Michael J. Clemens: Comparative analysis of the regulation of the interferoninducible protein kinase PKR by Epstein - Barr virus RNAs EBER-1 and EBER-2 and adenovirus VA, RNA
Nucl. Acids Res. 1993 21: 4483-4490; doi:10.1093/nar/21.19.4483 [Abstract] [Print PDF] [Request Permissions]

Andrey Kajava and Heinz Ru«terjans: Molecular modelling of the 3-D structure of RNA tetraloops with different nucleotide sequences
Nucl. Acids Res. 1993 21: 4556-4562; doi:10.1093/nar/21.19.4556 [Abstract] [Print PDF] [Request Permissions]

Michael P. Terns, Elsebet Lund, and James E. Dahlberg: A pre-export U1 snRNP in Xenopus laevis oocyte nuclei
Nucl. Acids Res. 1993 21: 4569-4573; doi:10.1093/nar/21.19.4569 [Abstract] [Print PDF] [Request Permissions]

Jeffrey A. Kowalak, Steven C. Pomerantz, Pamela F. Crain, and James A. McCloskey: A novel method for the determination of posttranscriptional modification in RNA by mass spectrometry
Nucl. Acids Res. 1993 21: 4577-4585; doi:10.1093/nar/21.19.4577 [Abstract] [Print PDF] [Request Permissions]

Gavin G. Pickett and David S. Peabody: Encapsidation of heterologous RNAs by bacteriophage MS2 coat protein
Nucl. Acids Res. 1993 21: 4621-4626; doi:10.1093/nar/21.19.4621 [Abstract] [Print PDF] [Request Permissions]

Samie R. Jaffrey, David J. Haile, Richard D. Klausner, and Joe B. Harford: The interaction between the iron-responsive element binding protein and its cognate RNA is highly dependent upon both RNA sequence and structure
Nucl. Acids Res. 1993 21: 4627-4631; doi:10.1093/nar/21.19.4627 [Abstract] [Print PDF] [Request Permissions]

CHEMISTRY:

Yoshihito Ueno, Ryuichi saito, and Tsuijiki Hata: Studies on the synthesis of nucleotidyl-peptides. II. The preparation of a nucleoidyl-peptide haVING A 5'-nucleotidyl-(p-o)-serine phosphodiester bond
Nucl. Acids Res. 1993 21: 4451-4457; doi:10.1093/nar/21.19.4451 [Abstract] [Print PDF] [Request Permissions]

Robert Haner and Thomas H. Keller: Synthesis and hybridization properties of oligonucleotides containing 2'-O-modified ribonucleotides
Nucl. Acids Res. 1993 21: 4499-4505; doi:10.1093/nar/21.19.4499 [Abstract] [Print PDF] [Request Permissions]

J.A. Fossella, Y.J. Kim, H. Shih, E.G. Richards, and J.R. Fresco: Relative specificities in binding of Watson - Crick base pairs by third strand residues in a DNA pyrimidine triplex motif
Nucl. Acids Res. 1993 21: 4511-4515; doi:10.1093/nar/21.19.4511 [Abstract] [Print PDF] [Request Permissions]

Ronald L. Morgan, Joseph E. Celebuski, and R. Fino James: Base composition analysis of oligonucleotides containing apurinic sites
Nucl. Acids Res. 1993 21: 4574-4576; doi:10.1093/nar/21.19.4574 [Abstract] [Print PDF] [Request Permissions]

METHODS:

Peter A. Zimmerman, Mary N. Carrington, and Thomas B. Nutman: Exploiting structural differences among heteroduplex molecules to simplify genotyping the DQA1 and DQB1 alleles in human lymphocyte typing
Nucl. Acids Res. 1993 21: 4541-4547; doi:10.1093/nar/21.19.4541 [Abstract] [Print PDF] [Request Permissions]

jon E.W. Lyall, Graeme M. Brown, Robert A. Furlong, Malcolm A. Freguson-smith, and Nabeel A. Affara: A method for creating chromosome-specific plasmid libraries enriched in clones containing [CA]_nmicrosatellite repeat sequences directly from flow-sorted chromosomes
Nucl. Acids Res. 1993 21: 4641-4642; doi:10.1093/nar/21.19.4641 [Print PDF] [Request Permissions]

Guünter TheiBen, Joürg Schoünborn, and Rolf Wagner: Temperature-gradient gel electrophoresis for the detection and characterization of curved DNA-fragments
Nucl. Acids Res. 1993 21: 4643-4644; doi:10.1093/nar/21.19.4643 [Print PDF] [Request Permissions]

Zairong Li and David A. Brow: A rapid assay for quantitative detection of specific RNAs
Nucl. Acids Res. 1993 21: 4645-4646; doi:10.1093/nar/21.19.4645 [Print PDF] [Request Permissions]

B. Schierwater and A. Ender: Different thermostable DNA polymerases may amplify different RAPD products
Nucl. Acids Res. 1993 21: 4647-4648; doi:10.1093/nar/21.19.4647 [Print PDF] [Request Permissions]

James N. Baraniuk: Solution hybridization with Hybond-mAP paper
Nucl. Acids Res. 1993 21: 4649-4650; doi:10.1093/nar/21.19.4649 [Print PDF] [Request Permissions]

Stefan Teigelkamp, Susanne Ebel, David W. Will, Tom Brown, and Jean D. Beggs: Branched poly-labelled oligonucleotides: enhanced specificity of fork-shaped biotinylated oligoribonucleotides for antisense affinity selection
Nucl. Acids Res. 1993 21: 4651-4652; doi:10.1093/nar/21.19.4651 [Print PDF] [Request Permissions]

Nicholas A. Kent, Louise E. Bird, and Jane Mellor: Chromatin analysis in yeast using NP-40 permeabilised sphaeroplasts
Nucl. Acids Res. 1993 21: 4653-4654; doi:10.1093/nar/21.19.4653 [Print PDF] [Request Permissions]

Martin M. Corcoran, Rachel E. Ibbotson, Wei Z. Lu, Robert M. Chapman, and David G. Oscier: Methylation analysis by means of PCR SSCP: application to clonality studies
Nucl. Acids Res. 1993 21: 4655; doi:10.1093/nar/21.19.4655 [Print PDF] [Request Permissions]

Michael Panaccio, Michael Georgesz, Catherine Hollywell, and Andrew Lew: Direct PCR from solid tissues without DNA extraction
Nucl. Acids Res. 1993 21: 4656; doi:10.1093/nar/21.19.4656 [Print PDF] [Request Permissions]

Author index:

: Author index
Nucl. Acids Res. 1993 21: 4657; doi:10.1093/nar/21.19.4657 [Print PDF] [Request Permissions]

CORRIGENDUM:

G. Keith, M. Yusupov, C. Briand, D. Moras, and D. Kern: Sequence of tRNA^Aspfrom Thermus thermophilusHB8
Nucl. Acids Res. 1993 21: 4658; doi:10.1093/nar/21.19.4658 [Abstract] [Print PDF] [Request Permissions]

ENZYMOLOGY:

Caroline Wenzel and Wilhelm Guschlbauer: Dam methyltransferase from Escherichia coLi: sequence of a peptide segment involved in S-adenosyl-methionine binding
Nucl. Acids Res. 1993 21: 4604-4609; doi:10.1093/nar/21.19.4604 [Abstract] [Print PDF] [Request Permissions]

GENOME STRUCTURE AND MAPPING:

Gerald Walter, Ian M. Tomlinson, Graham P. Cook, Greg Winter, Terry H. Rabbitts, and Paul H. Dear: HAPPY mapping of a YAC reveals alternative haplotypes in the human immunoglobulin V_H locus
Nucl. Acids Res. 1993 21: 4524-4529; doi:10.1093/nar/21.19.4524 [Abstract] [Print PDF] [Request Permissions]

ORIGINAL ARTICLES:

Jeffrey R. Sampson and Margaret E. Saks: Contributions of discrete tRNA^Ser domains to aminoacylation by E.coli seryl-tRNA synthetase: a kinetic analysis using model RNA substrates
Nucl. Acids Res. 1993 21: 4467-4475; doi:10.1093/nar/21.19.4467 [Abstract] [Print PDF] [Request Permissions]

SEQUENCE:

Zhe Li, Sirinivas R. Kalsapudi, and Geoffrey Childs: Isolation and characterization of cDNAs encoding the sea urchin (Strongylocentrotus purpuratus) homologue of the CCAAT binding protein NF-Y A subunit
Nucl. Acids Res. 1993 21: 4639; doi:10.1093/nar/21.19.4639 [Print PDF] [Request Permissions]

S. Mercure, N. Rougeau, S. Montplaisir, and G. Lemay: Complete nucleotide sequence of Candida albicans 5.8S rRNA coding gene and flanking internal transcribed spacers
Nucl. Acids Res. 1993 21: 4640; doi:10.1093/nar/21.19.4640 [Print PDF] [Request Permissions]

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