Nucl. Acids Res. -- Table of Contents (21 [22, November 11 1993])

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Contents: Volume 21, Number 22    11 November 1993    [Index by Author]

       COMPUTATIONAL BIOLOGY

       MOLECULAR BIOLOGY

       RNA

       CHEMISTRY

       METHODS

       Articles

       AUTHOR INDEX

       CORRIGENDA

       ENZYMOLOGY

       GENOME STRUCTURE AND MAPPING

       ORIGINAL ARTICLES

       SHORTER REPORTS

       STRUCTURAL BIOLOGY

Other Issues:

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Front Matter (Print PDF)

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

COMPUTATIONAL BIOLOGY:

Giorgio Valle: Discover 1: a new program to search for unusually represented DNA motifs
Nucl. Acids Res. 1993 21: 5152-5156; doi:10.1093/nar/21.22.5152 [Abstract] [Print PDF] [Request Permissions]

Dan Larhammar and C.Aris Chatzidimitriou-Dreismann: Biological origins of long-range correlations and compositional variations in DNA
Nucl. Acids Res. 1993 21: 5167-5170; doi:10.1093/nar/21.22.5167 [Abstract] [Print PDF] [Request Permissions]

Hervé Philippe: MUST, a computer package of Management Utilities for Sequences and Trees
Nucl. Acids Res. 1993 21: 5264-5272; doi:10.1093/nar/21.22.5264 [Abstract] [Print PDF] [Request Permissions]

MOLECULAR BIOLOGY:

Birgit Woelker and Walter Messer: The structure of the initiation complex at the replication origin, oriC, of Escherichia coli
Nucl. Acids Res. 1993 21: 5025-5033; doi:10.1093/nar/21.22.5025 [Abstract] [Print PDF] [Request Permissions]

Holger Puchta, Bernard Dujon, and Barbara Hohn: Homologous recombination in plant cells is enhanced by in vivo induction of double strand breaks into DNA by a site-specific endonuclease
Nucl. Acids Res. 1993 21: 5034-5040; doi:10.1093/nar/21.22.5034 [Abstract] [Print PDF] [Request Permissions]

Thomas Feldmann, Regina Alex, Jörg Suckow, Renate Dildrop, Brigitte Kisters–Woike, and Benno Müller–Hill: Single exchanges of amino acids in the basic region change the specificity of N-Myc
Nucl. Acids Res. 1993 21: 5050-5058; doi:10.1093/nar/21.22.5050 [Abstract] [Print PDF] [Request Permissions]

Kenneth H. Mellits, Ronald T. Hay, and Stephen Goodbourn: Proteolytic degradation of MAD3 (I ${varkappa}$ B ${alpha}$ ) and enhanced processing of the NF- ${varkappa}$ B precursor p105 are obligatory steps in the activation of NF- ${varkappa}$ B
Nucl. Acids Res. 1993 21: 5059-5066; doi:10.1093/nar/21.22.5059 [Abstract] [Print PDF] [Request Permissions]

Lai-chu Wu, Chi-Ho Mak, Neil Dear, Thomas Boehm, Letizia Foroni, and Terence H. Rabitts: Molecular cloning of a zinc finger protein which binds to the heptamer of the signal sequence for V(D)J recombination
Nucl. Acids Res. 1993 21: 5067-5073; doi:10.1093/nar/21.22.5067 [Abstract] [Print PDF] [Request Permissions]

Frances M. Adamski, B.Cameron Donly, and Warren P. Tate: Competition between frameshifting, termination and suppression at the frameshift site in the Escherichia coli release factor-2 mRNA
Nucl. Acids Res. 1993 21: 5074-5078; doi:10.1093/nar/21.22.5074 [Abstract] [Print PDF] [Request Permissions]

Fujiko Watt and Peter L. Molloy: Specific cleavage of transcription factors by the thiol protease, m-calpain
Nucl. Acids Res. 1993 21: 5092-5100; doi:10.1093/nar/21.22.5092 [Abstract] [Print PDF] [Request Permissions]

Don J. Katcoff, Eyal Yona, Gitit Hershkovits, Hadas Friedman, Yael Cohen, and Orly Dgany: SIN1 interacts with a protein that binds the URS1 region of the yeast HO gene
Nucl. Acids Res. 1993 21: 5101-5109; doi:10.1093/nar/21.22.5101 [Abstract] [Print PDF] [Request Permissions]

Chi-Hyun Park and Aziz Sancar: Reconstitution of mammalian excision repair activity with mutant cell-free extracts and XPAC and ERCC1 proteins expressed in Escherichia coli
Nucl. Acids Res. 1993 21: 5110-5116; doi:10.1093/nar/21.22.5110 [Abstract] [Print PDF] [Request Permissions]

Tetsuya Nosaka, Yasuo Ariumi, Mamoru Sakurai, Ryo Takeuchi, and Masakazu Hatanaka: Novel internal promoter $minusb$ ;enhancer of HTLV-I for Tax expression
Nucl. Acids Res. 1993 21: 5124-5129; doi:10.1093/nar/21.22.5124 [Abstract] [Print PDF] [Request Permissions]

Rémy Bosselut, Jonathan Levin, Elisabeth Adjadj, and Jacques Ghysdael: A single amino-acid substitution in the Ets domain alters core DNA binding specificity of Ets1 to that of the related transcription factors Elf1 and E74
Nucl. Acids Res. 1993 21: 5184-5191; doi:10.1093/nar/21.22.5184 [Abstract] [Print PDF] [Request Permissions]

Erik C. Stabell and Paul D. Olivo: A truncated herpes simplex virus origin binding protein which contains the carboxyl terminal origin binding domain binds to the origin of replication but does not alter its conformation
Nucl. Acids Res. 1993 21: 5203-5211; doi:10.1093/nar/21.22.5203 [Abstract] [Print PDF] [Request Permissions]

Joseph T. Bruder, Gisela Heidecker, Tse-Hua Tan, John C. Weske, David Derse, and Ulf R. Rapp: Oncogene activation of HIV-LTR-driven expression via the NF- ${varkappa}$ B binding sites
Nucl. Acids Res. 1993 21: 5229-5234; doi:10.1093/nar/21.22.5229 [Abstract] [Print PDF] [Request Permissions]

Mike Huang, Jae Woon Lee, and David O. Peterson: Functional redundancy of octamer elements in the mouse mammary tumor virus promoter
Nucl. Acids Res. 1993 21: 5235-5241; doi:10.1093/nar/21.22.5235 [Abstract] [Print PDF] [Request Permissions]

Monique Turmel, Jean-Patrick Mercier, and Marie-José Côté: Group I introns interrupt the chloroplast psaB and psbC and the mitochondrial rrnL gene in Chlamydomonas
Nucl. Acids Res. 1993 21: 5242-5250; doi:10.1093/nar/21.22.5242 [Abstract] [Print PDF] [Request Permissions]

Paul Crisel, Stephanie Thompson, and William James: Inhibition of HIV-1 replication by ribozymes that show poor activity in vitro
Nucl. Acids Res. 1993 21: 5251-5255; doi:10.1093/nar/21.22.5251 [Abstract] [Print PDF] [Request Permissions]

Xuedong Liu and Janet E. Mert: Polyadenylation site selection cannot occur in vivoafter excision of the 3'-terminal intron
Nucl. Acids Res. 1993 21: 5256-5263; doi:10.1093/nar/21.22.5256 [Abstract] [Print PDF] [Request Permissions]

RNA:

Laurent Cavarec and Thierry Heidmann: The Drosophila copia retrotransposon contains binding sites for transcriptional regulation by homeoproteins
Nucl. Acids Res. 1993 21: 5041-5049; doi:10.1093/nar/21.22.5041 [Abstract] [Print PDF] [Request Permissions]

Kyle D. Yesland and Jerry D. Johnson: Anticodon bases C34 and C35 are major, positive, identity elements in Saccharomyces cerevisiae tRNA^Trp
Nucl. Acids Res. 1993 21: 5079-5084; doi:10.1093/nar/21.22.5079 [Abstract] [Print PDF] [Request Permissions]

Michel Popielarz, Renata Gattoni, and James Stevenin: Contrasted cis-acting effects of downstream 5' splice sites on the splicing of a retained intron: the adenoviral E1A pre-mRNA model
Nucl. Acids Res. 1993 21: 5144-5151; doi:10.1093/nar/21.22.5144 [Abstract] [Print PDF] [Request Permissions]

Jonathan Ellis and John Rogers: Design and specificity of hammerhead ribozymes against calretinin mRNA
Nucl. Acids Res. 1993 21: 5171-5178; doi:10.1093/nar/21.22.5171 [Abstract] [Print PDF] [Request Permissions]

CHEMISTRY:

Song-Hua Ke and Roger M. Wartell: Influence of nearest neighbor sequence on the stability of base pair mismatches in long DNA: determination by temperature-gradient gel electrophoresis
Nucl. Acids Res. 1993 21: 5137-5143; doi:10.1093/nar/21.22.5137 [Abstract] [Print PDF] [Request Permissions]

Anette Chur, Bjørn Holst, Otto Dahl, Poul Valentin-Hansen, and Erik B. Pedersen: Synthesis of a carboxamide linked T^*T dimer and its incorporation in oligonucleotides
Nucl. Acids Res. 1993 21: 5179-5183; doi:10.1093/nar/21.22.5179 [Abstract] [Print PDF] [Request Permissions]

METHODS:

D.M.D. Bailey, N.P. Carter, D.de Vos, M.A. Leversha, M.T. Perryman, and M.A. Ferguson-Smith: Coincidence painting: a rapid method for cloning region specific DNA sequences
Nucl. Acids Res. 1993 21: 5117-5123; doi:10.1093/nar/21.22.5117 [Abstract] [Print PDF] [Request Permissions]

Reneé M. Hoet, Berthold Kastner, Reinhard Lührmann, and Walther J. van Venrooij: Purification and characterization of human autoantibodies directed to specific regions on U1RNA; recognition of native U1RNP complexes
Nucl. Acids Res. 1993 21: 5130-5136; doi:10.1093/nar/21.22.5130 [Abstract] [Print PDF] [Request Permissions]

Jonathan D. Oliner, Kenneth W. Kinzler, and Bert Vogelstein: In vivo cloning of PCR products in E.coli
Nucl. Acids Res. 1993 21: 5192-5197; doi:10.1093/nar/21.22.5192 [Abstract] [Print PDF] [Request Permissions]

Anat Aharoni, Nava Baran, and Haim Manor: Characterization of a multisubunit human protein which selectively binds single stranded d(GA)_nand d(GT)_nsequence repeats in DNA
Nucl. Acids Res. 1993 21: 5221-5228; doi:10.1093/nar/21.22.5221 [Abstract] [Print PDF] [Request Permissions]

N.German Pasteris, Michael D. Bialecki, and Jerome L. Gorski: YAC subclone contig assembly by serial interspersed repetitive sequence (IRS)-PCR product hybridizations
Nucl. Acids Res. 1993 21: 5275-5276; doi:10.1093/nar/21.22.5275 [Print PDF] [Request Permissions]

Karen L. Bondy and Tim R. Zacharewski: ICI 164,384: a control for investigating estrogen responsive genes
Nucl. Acids Res. 1993 21: 5277-5278; doi:10.1093/nar/21.22.5277 [Print PDF] [Request Permissions]

Heng Zhu, Feng Qu, and Li-Huang Zhu: Isolation of genomic DNAs from plants, fungi and bacteria using benzyl chloride
Nucl. Acids Res. 1993 21: 5279-5280; doi:10.1093/nar/21.22.5279 [Print PDF] [Request Permissions]

Aftab S. Karim and Joel K. Weltman: Formation of protein conjugates of phosphorothioate nucleoside diphosphate beta-S
Nucl. Acids Res. 1993 21: 5281-5282; doi:10.1093/nar/21.22.5281 [Print PDF] [Request Permissions]

Rajeev K. Agarwal and Andras Perl: PCR amplification of highly GC-rich DNA template after denaturation by NaOH
Nucl. Acids Res. 1993 21: 5283-5284; doi:10.1093/nar/21.22.5283 [Print PDF] [Request Permissions]

Articles:

Georg Mohr, Philip S. Perlman, and Alan M. Lambowitz: Evolutionary relationships among group II intron-encoded proteins and identification of a conserved domain that may be related to maturase function
Nucl. Acids Res. 1993 21: 4991-4997; doi:10.1093/nar/21.22.4991 [Abstract] [Print PDF] [Request Permissions]

AUTHOR INDEX:

: AUTHOR INDEX
Nucl. Acids Res. 1993 21: 5285; doi:10.1093/nar/21.22.5285 [Print PDF] [Request Permissions]

CORRIGENDA:

A. Garbesi, M.L. Capobianco, F.P. Colonna, L. Tondelli, F. Arcamone, G. Manzini, C.W. Hilbers, J.M.E. Aelen, and M.J.J Blommers: L-DNAs as potential antimessenger oligonucleotides: a reassessment
Nucl. Acids Res. 1993 21: 5286; doi:10.1093/nar/21.22.5286 [Abstract] [Print PDF] [Request Permissions]

T. Olsson, K. Ekwall, and T. Ruusala: The silent P mating type locus in fission yeast contains two autonomously replicating sequences
Nucl. Acids Res. 1993 21: 5286; doi:10.1093/nar/21.22.5286-a [Abstract] [Print PDF] [Request Permissions]

ENZYMOLOGY:

Akihiko Tanizawa, Kurt W. Kohn, and Yves Pommier: Induction of cleavage in topoisomerase I c-DNA by topoisomerase I enzymes from calf thymus and wheat germ in the presence and absence of camptothecin
Nucl. Acids Res. 1993 21: 5157-5166; doi:10.1093/nar/21.22.5157 [Abstract] [Print PDF] [Request Permissions]

Kristin A. Eckert and Thomas A. Kunkel: Fidelity of DNA synthesis catalyzed by human DNA polymerase ${alpha}$ and HIV-1 reverse transcriptase: effect of reaction pH
Nucl. Acids Res. 1993 21: 5212-5220; doi:10.1093/nar/21.22.5212 [Abstract] [Print PDF] [Request Permissions]

GENOME STRUCTURE AND MAPPING:

David B. Krizman and Susan M. Berget: Efficient selection of 3'-terminal exons from vertebrate DNA
Nucl. Acids Res. 1993 21: 5198-5202; doi:10.1093/nar/21.22.5198 [Abstract] [Print PDF] [Request Permissions]

ORIGINAL ARTICLES:

Christian Hagemeier, Alistair Cook, and Tony Kouzarides: The retinoblastoma protein binds E2F residues required for activation in vivo and TBP binding in vitro
Nucl. Acids Res. 1993 21: 4998-5004; doi:10.1093/nar/21.22.4998 [Abstract] [Print PDF] [Request Permissions]

J. Chattopadhyaya, S.-I. Yamakage, T.V. Maltseva, F. P. Nilson, and A. Fo«ldesi: Deuteriation of sugar protons simplify NMR assignments and structure determination of large oligonucleotide by the ¹H-NMR window approach
Nucl. Acids Res. 1993 21: 5005-5011; doi:10.1093/nar/21.22.5005 [Abstract] [Print PDF] [Request Permissions]

Stefan Binder and Axel Brennicke: A tRNA gene transcription initiation site is similar to mRNA and rRNA promoters in plant mitochondria
Nucl. Acids Res. 1993 21: 5012-5019; doi:10.1093/nar/21.22.5012 [Abstract] [Print PDF] [Request Permissions]

Ben Berkhout and Bep Klaver: In vivo selection of randomly mutated retroviral genomes
Nucl. Acids Res. 1993 21: 5020-5024; doi:10.1093/nar/21.22.5020 [Abstract] [Print PDF] [Request Permissions]

SHORTER REPORTS:

Wolfram Zillig: Confusion in the assignments of Sulfolobus sequences to Sulfolobus species
Nucl. Acids Res. 1993 21: 5273; doi:10.1093/nar/21.22.5273 [Print PDF] [Request Permissions]

A.R. Lehmann: Duplicated region of sequence similarity to the human XRCC1 DNA repair gene in the Schizosaccharomyces pombe rad4/cut5gene
Nucl. Acids Res. 1993 21: 5274; doi:10.1093/nar/21.22.5274 [Print PDF] [Request Permissions]

STRUCTURAL BIOLOGY:

Hartmut Fritzsche, Alain Akhebat, Eliane Taillandier, Karsten Rippe, and Thomas M. Jovin: Structure and Drug interaction of parellel-stranded DNA studies by infrared spectroscope and fluorence
Nucl. Acids Res. 1993 21: 5085-5091; doi:10.1093/nar/21.22.5085 [Abstract] [Print PDF] [Request Permissions]

Nucleic Acids Research