Nucl. Acids Res. -- Table of Contents (21 [8, April 25 1993])

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Contents: Volume 21, Number 8    25 April 1993    [Index by Author]

       SURVEY AND SUMMARY

       MOLECULAR BIOLOGY

       CHEMISTRY

       METHODS

       Erratum

       Author index

       ENZYMOLOGY

       GENOME STRUCTURE AND MAPPING

       SEQUENCE

Other Issues:

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SURVEY AND SUMMARY:

Matthew P. Scott: A rational nomenclature for vertebrate homeobox (HOX) genes
Nucl. Acids Res. 1993 21: 1687-1688; doi:10.1093/nar/21.8.1687 [Abstract] [Print PDF] [Request Permissions]

MOLECULAR BIOLOGY:

Attila Marton, Dominique Jean, Louis Delbecchi, Daniel T. Simmons, and Pierre Bourgaux: Topoisomerase activity associated with SV40 large tumor antigen
Nucl. Acids Res. 1993 21: 1689-1695; doi:10.1093/nar/21.8.1689 [Abstract] [Print PDF] [Request Permissions]

J. van Himbergen, B. van Geffen, and J. van Duin: Translational control by a long range RNA–RNA interaction; a basepair substitution analysis
Nucl. Acids Res. 1993 21: 1713-1717; doi:10.1093/nar/21.8.1713 [Abstract] [Print PDF] [Request Permissions]

Robert G. Lloyd and Gary J. Sharples: Processing of recombination intermediates by the RecG and RuvAB proteins of Escherichia coli
Nucl. Acids Res. 1993 21: 1719-1725; doi:10.1093/nar/21.8.1719 [Abstract] [Print PDF] [Request Permissions]

James R. Matthews, Wiweka Kaszubska, Gerardo Turcatti, Timothy N.C. Wells, and Ronald T. Hay: Role of cysteine₆₂ in DNA recognition by the P50 subunit of NF-_xB
Nucl. Acids Res. 1993 21: 1727-1734; doi:10.1093/nar/21.8.1727 [Abstract] [Print PDF] [Request Permissions]

Catherine Legraverend, Per Antonson, Per Flodby, and G. Xanthopoulos: High level activity of the mouse CCAAT/enhancer binding protein (C/EBP ${alpha}$ ) gene promoter involves autoregulation and several ubiquitous transcription factors
Nucl. Acids Res. 1993 21: 1735-1742; doi:10.1093/nar/21.8.1735 [Abstract] [Print PDF] [Request Permissions]

Bruce J. Dolnick: Cloning and characterization of a naturally occurring antisense RNA to human thymidylate synthase mRNA
Nucl. Acids Res. 1993 21: 1747-1752; doi:10.1093/nar/21.8.1747 [Abstract] [Print PDF] [Request Permissions]

Robert A. Lerch and Paul D. Friesen: The 35-kilodalton protein gene (p35) of Autographa californica nuclear polyhedrosis virus and the neomycin resistance gene provide dominant selection of recombinant baculoviruses
Nucl. Acids Res. 1993 21: 1753-1760; doi:10.1093/nar/21.8.1753 [Abstract] [Print PDF] [Request Permissions]

Tatsunobu-Ryushin Mizuta, Yosho Fukita, Takashi Miyoshi, Akira Shimizu, and Tasuku Honjo: Isolation of cDNA encoding a binding protein specific to 5'-phosphorylated single-stranded DNA with G-rich sequences
Nucl. Acids Res. 1993 21: 1761-1766; doi:10.1093/nar/21.8.1761 [Abstract] [Print PDF] [Request Permissions]

Carlos Rovira, Wolfgang Beermann, and Jan-Erik Edström: A repetitive DNA sequence associated with the centromeres of Chironomus pallidivittatus
Nucl. Acids Res. 1993 21: 1775-1781; doi:10.1093/nar/21.8.1775 [Abstract] [Print PDF] [Request Permissions]

Ruhul Kuddus and Martin C. Schmidt: Effect of the non-conserved N-terminus on the DNA binding activity of the yeast TATA binding protein
Nucl. Acids Res. 1993 21: 1789-1796; doi:10.1093/nar/21.8.1789 [Abstract] [Print PDF] [Request Permissions]

Sulayman D. Dib-Hajj, Scott C. Boulanger, Sharda K. Hebbar, Craig L. Peebles, James S. Franzen, and Philip S. Perlman: Domain 5 interacts with domain 6 and influences the second transesterification reaction of group II intron self-splicing
Nucl. Acids Res. 1993 21: 1797-1804; doi:10.1093/nar/21.8.1797 [Abstract] [Print PDF] [Request Permissions]

Amy L. Springer and Molly B. Schimd: Molecular characterization of the Salmonella typhimurium parE gene
Nucl. Acids Res. 1993 21: 1805-1809; doi:10.1093/nar/21.8.1805 [Abstract] [Print PDF] [Request Permissions]

Maria Neve Ombra, Monica Autiero, Andrea DeLerma Barbaro, Rosalba Barretta, Giovanna Del Pozzo, and John Guardiola: Recognition of distinct HLA-DQA1 promoter elements by a single nuclear factor containing Jun and Fos or antigenically related proteins
Nucl. Acids Res. 1993 21: 1811-1818; doi:10.1093/nar/21.8.1811 [Abstract] [Print PDF] [Request Permissions]

Ali O. Belduz, Eun Ju Lee, and James G. Harman: Mutagenesis of the cyclic AMP receptor protein of Escherichia coli targeting positions 72 and 82 of the cyclic nucleotide binding pocket
Nucl. Acids Res. 1993 21: 1827-1835; doi:10.1093/nar/21.8.1827 [Abstract] [Print PDF] [Request Permissions]

James F. Curran: Analysis of effects of tRNA:message stability on frameshift frequency at the Escherichia coli RF2 programmed frameshift site
Nucl. Acids Res. 1993 21: 1837-1843; doi:10.1093/nar/21.8.1837 [Abstract] [Print PDF] [Request Permissions]

Pierre-Alain Menoud, Renate Matthies, Jan Hofsteenge, and Yoshikuni Nagamine: Purification and cDNA cloning of a transcription factor which functionally cooperates within a cAMP regulatory unit in the porcine uPA gene
Nucl. Acids Res. 1993 21: 1845-1852; doi:10.1093/nar/21.8.1845 [Abstract] [Print PDF] [Request Permissions]

Arian F.A. Smit: Identification of a new, abundant superfamily of mammalian LTR-transposons
Nucl. Acids Res. 1993 21: 1863-1872; doi:10.1093/nar/21.8.1863 [Abstract] [Print PDF] [Request Permissions]

Andrea Caricasole and Andrew Ward: Transactivation of mouse insulin-like growth factor II (IGF-II) gene promoters by the AP-1 complex
Nucl. Acids Res. 1993 21: 1873-1879; doi:10.1093/nar/21.8.1873 [Abstract] [Print PDF] [Request Permissions]

Jean-Philippe Girard, Jacgues Feliu, MichÈle Caizergues-Ferrer, and Bruno Lapeyre: Study of multiple fibrillarin mRNAs reveals that 3' end formation in Schizosaccharomyces pombe is sensitive to cold shock
Nucl. Acids Res. 1993 21: 1881-1887; doi:10.1093/nar/21.8.1881 [Abstract] [Print PDF] [Request Permissions]

Katherine Grondin, Barbara Papadopoulon, and Marc Ouellette: Homologous recombination between direct repeat sequences yields P-glycoprotein containing amplicons in arsenite resistant Leishmania
Nucl. Acids Res. 1993 21: 1895-1901; doi:10.1093/nar/21.8.1895 [Abstract] [Print PDF] [Request Permissions]

Yvan L'Homme and Gregory G. Brown: Organizational differences between cytoplasmic male sterile and male fertile Brassica mitochondrial genomes are confined to a single transposed locus
Nucl. Acids Res. 1993 21: 1903-1909; doi:10.1093/nar/21.8.1903 [Abstract] [Print PDF] [Request Permissions]

Ping Wen, Nancy Carwford, and Joseph Locker: A promoter-linked coupling region required for stimulation of ${alpha}$ -fetoprotein transcription by distant enhancers
Nucl. Acids Res. 1993 21: 1911-1918; doi:10.1093/nar/21.8.1911 [Abstract] [Print PDF] [Request Permissions]

Deborah R. Taylor and Michael B. Mathews: Transcription by SP6 RNA polymerase exhibits an ATP dependence that is influenced by promoter topology
Nucl. Acids Res. 1993 21: 1927-1933; doi:10.1093/nar/21.8.1927 [Abstract] [Print PDF] [Request Permissions]

Sergey V. Steinberg and Lev L. Kisselev: Mosaic tile model for tRNA-enzyme recognition
Nucl. Acids Res. 1993 21: 1941-1947; doi:10.1093/nar/21.8.1941 [Abstract] [Print PDF] [Request Permissions]

Perungavur N. Ranganathan and Kamel Khalili: The transcriptional enhancer element, xB, regulates promoter activity of the human neurotropic virus, JCV, in cells derived from the CNS
Nucl. Acids Res. 1993 21: 1959-1964; doi:10.1093/nar/21.8.1959 [Abstract] [Print PDF] [Request Permissions]

Caretha L. Creasy, Stephen L. Madden, and Lawrence W. Bergman: Molecular analysis of the PHO81 gene of Saccharomyces cerevisiae
Nucl. Acids Res. 1993 21: 1975-1982; doi:10.1093/nar/21.8.1975 [Abstract] [Print PDF] [Request Permissions]

E.Byrd Quinlivan, Elizabeth Holley-Guthrie, Melanie Norris, David Gutsch, S.L. Bachenheimer, and Shannon C. Kenney: Direct BRLF1 binding is required for cooperative BZLF1/BRLF1 activation of the Epstein-Barr virus early promoter, BMRF1
Nucl. Acids Res. 1993 21: 1999-2007; doi:10.1093/nar/21.8.1999 [Abstract] [Print PDF] [Request Permissions]

CHEMISTRY:

John Grzybowski, David W. Will, R.E. Randall, Clive A. Smith, and Tom Brown: Synthesis and antibody-mediated detection of oligonucleotides containing multiple 2,4-dinitrophenyl reporter groups
Nucl. Acids Res. 1993 21: 1705-1712; doi:10.1093/nar/21.8.1705 [Abstract] [Print PDF] [Request Permissions]

Catherine Lever, Xiang Li, Richard Cosstick, Susanne Edel, and Tom Brown: Thermodynamic stability and drug-binding properties of oligodeoxyribonucleotide duplexes containing 3-deazaadenine:thymine base pairs
Nucl. Acids Res. 1993 21: 1743-1746; doi:10.1093/nar/21.8.1743 [Abstract] [Print PDF] [Request Permissions]

Debasisa Mohanty and Manju Bansal: Conformational polymorphism in G-tetraplex structures: strand reversal by base flipover or sugar flipover
Nucl. Acids Res. 1993 21: 1767-1774; doi:10.1093/nar/21.8.1767 [Abstract] [Print PDF] [Request Permissions]

Eoin Fahy, Geneva R. David, Luke J. DiMichele, and Soumitra S. Ghosh: Design and synthesis of polyacrylamide-based oligonucleotide supports for use in nucleic acid diagnostics
Nucl. Acids Res. 1993 21: 1819-1826; doi:10.1093/nar/21.8.1819 [Abstract] [Print PDF] [Request Permissions]

David J. Ecker, Timothy A. Vickers, Ronnie Hanecak, Vickie Diver, and Kevin Anderson: Rational screening of oligonucleotide combinatorial libraries for drug discovery
Nucl. Acids Res. 1993 21: 1853-1856; doi:10.1093/nar/21.8.1853 [Abstract] [Print PDF] [Request Permissions]

Carleen Cullinane and Don R. Phillips: Thermal stability of DNA adducts induced by cyanomorpholinoadriamycin in vitro
Nucl. Acids Res. 1993 21: 1857-1862; doi:10.1093/nar/21.8.1857 [Abstract] [Print PDF] [Request Permissions]

Edwin L.M. Lempers, John S. Bashkin, and Nenad M. Kostic: A new trinuclear complex of platinum and iron efficiently promotes cleavage of plasmid DNA
Nucl. Acids Res. 1993 21: 1983-1990; doi:10.1093/nar/21.8.1983 [Abstract] [Print PDF] [Request Permissions]

Paul A. Feldstein and George Bruening: Catalytically active geometry in the reversible circularization of ‘mini-monomer’ RNAs derived from the complementary strand of tobacco ringspot virus satellite RNA
Nucl. Acids Res. 1993 21: 1991-1998; doi:10.1093/nar/21.8.1991 [Abstract] [Print PDF] [Request Permissions]

METHODS:

Yih-Sheng Yang, William J. Watson, Philip W. Tucker, and J. Donald Capra: Construction of recombinant DNA by exonuclease recession
Nucl. Acids Res. 1993 21: 1889-1893; doi:10.1093/nar/21.8.1889 [Abstract] [Print PDF] [Request Permissions]

Mario Mörl and Carlo Schmelzer: A simple method for isolation of intact RNA from dried polyacrylamide gels
Nucl. Acids Res. 1993 21: 2016; doi:10.1093/nar/21.8.2016 [Print PDF] [Request Permissions]

Vladimir Zachar, Robert A. Thomas, and Anton Scott Goustin: Absolute quantification of target DNA: a simple competitive PCR for efficient analysis of multiple samples
Nucl. Acids Res. 1993 21: 2017-2018; doi:10.1093/nar/21.8.2017 [Print PDF] [Request Permissions]

Paul D. Siebert and Alex Chenchik: Modified acid guanidinium thiocyanate- phenol -chloroform RNA extraction method which greatly reduces DNA contamination
Nucl. Acids Res. 1993 21: 2019-2020; doi:10.1093/nar/21.8.2019 [Print PDF] [Request Permissions]

Laura N. Bull, Jane E. Hewitt, David R. Cox, and Richard M. Myers: Sensitivity of HincW to CpG methylation
Nucl. Acids Res. 1993 21: 2021; doi:10.1093/nar/21.8.2021 [Print PDF] [Request Permissions]

Erratum:

M. Lapadat-Tapolsky, H. De Rocquigny, D. Van Gent, B. Roques, R. Plasterk, and J.-L. Darlix: Interactions between HIV-1 nucleocapsid protein and viral DNA may have important functions in the viral life cycle
Nucl. Acids Res. 1993 21: 2024; doi:10.1093/nar/21.8.2024 [Abstract] [Print PDF] [Request Permissions]

Author index:

: Author index
Nucl. Acids Res. 1993 21: 2023; doi:10.1093/nar/21.8.2023 [Print PDF] [Request Permissions]

ENZYMOLOGY:

Kristine Mann: Topoisomerase activity is associated with purified SV40 T antigen
Nucl. Acids Res. 1993 21: 1697-1704; doi:10.1093/nar/21.8.1697 [Abstract] [Print PDF] [Request Permissions]

Hong-Lin Li, Bhadrani S. Chelladurai, Kejing Zhang, and Allen W. Nicholson: Ribonuclease III cleavage of a bacteriophage T7 processing signal. Divalent cation specificity, and specific anion effects
Nucl. Acids Res. 1993 21: 1919-1925; doi:10.1093/nar/21.8.1919 [Abstract] [Print PDF] [Request Permissions]

Suk-Hee Lee: The 3'–5' exonuclease of human DNA polymerase ${delta}$ (pol ${delta}$ ) is regulated by pol ${delta}$ accessory factors and deoxyribonucleoside triphosphates
Nucl. Acids Res. 1993 21: 1935-1939; doi:10.1093/nar/21.8.1935 [Abstract] [Print PDF] [Request Permissions]

GENOME STRUCTURE AND MAPPING:

Stefan Stoll, Thomas Zirlik, Christian Maercker, and Hans J. Lipps: The organization of internal telomeric repeats in the polytene chromosomes of the hypotrichous ciliate Stylonychia lemnae
Nucl. Acids Res. 1993 21: 1783-1788; doi:10.1093/nar/21.8.1783 [Abstract] [Print PDF] [Request Permissions]

Ruitang Deng and Kenny V. Brock: 5' and 3' untranslated regions of pestivirus genome: primary and secondary structure analyses
Nucl. Acids Res. 1993 21: 1949-1957; doi:10.1093/nar/21.8.1949 [Abstract] [Print PDF] [Request Permissions]

Richard Mott, Andrei Grigoriev, Elmar Maier, Jorg Hoheisel, and Hans Lehrach: Algorithms and software tools for ordering clone libraries: application to the mapping of the genome of Schizosaccharomyces pombe
Nucl. Acids Res. 1993 21: 1965-1974; doi:10.1093/nar/21.8.1965 [Abstract] [Print PDF] [Request Permissions]

SEQUENCE:

Marco W. Schiham, Marco van Eijk, Marc van de Wetering, and Hans C. Clevers: The murine Sox-4 protein is encoded on a single exon
Nucl. Acids Res. 1993 21: 2009; doi:10.1093/nar/21.8.2009 [Print PDF] [Request Permissions]

G.J. Sharples and R.G. Lloyd: Location of the Bacillus subtilis sbcD gene downstream of addAB, the analogues of E.coli recBC
Nucl. Acids Res. 1993 21: 2010; doi:10.1093/nar/21.8.2010 [Print PDF] [Request Permissions]

S. Ramachandran, A. Bhattacharya, and S. Battacharya: Nucleotide sequence analysis of the rRNA transcription unit of a pathogenic Entamoeba histolytica strain HM-1:IMSS
Nucl. Acids Res. 1993 21: 2011; doi:10.1093/nar/21.8.2011 [Print PDF] [Request Permissions]

Nam-Soon Kim, Takae Kato, Naoto Abe, and Seishi Kato: Nucleotide sequence of human cDNA encoding eukaryotic initiation factor 4AI
Nucl. Acids Res. 1993 21: 2012; doi:10.1093/nar/21.8.2012 [Print PDF] [Request Permissions]

Shin-ichiro Kidou, Masaaki Umeda, Atsushi Kato, and Hirofumi Uchimiya: Plant cDNA homologue to rat insulinoma gene encoding ribosomal protein S15
Nucl. Acids Res. 1993 21: 2013; doi:10.1093/nar/21.8.2013 [Print PDF] [Request Permissions]

K.L. Gearing, J.-Å Gustafsson, and S. Okret: Heterogeneity in the polyglutamine tract of the glucocorticoid receptor from different rat strains
Nucl. Acids Res. 1993 21: 2014; doi:10.1093/nar/21.8.2014 [Print PDF] [Request Permissions]

Sergey Kh. Degtyarev, Elene A. Prikhod'ko, Gregory G. Prikhod'ko, and Victor N. Krasnykh: Vspl methylase belongs to m6A-gamma class of adenine methylases
Nucl. Acids Res. 1993 21: 2015; doi:10.1093/nar/21.8.2015 [Print PDF] [Request Permissions]

Nucleic Acids Research