Nucleic Acids Research

COMPUTATIONAL BIOLOGY:

Sean R. Eddy and Richard Durbin

RNA sequence analysis using covariance models
Nucl. Acids Res. 1994 22: 2079-2088; doi:10.1093/nar/22.11.2079 [Abstract] [Print PDF] [Request Permissions]  

SURVEY AND SUMMARY:

Steven Althoff, David Selinger, and Jo Ann Wise

Molecular evolution of SRP cycle components: functional implications
Nucl. Acids Res. 1994 22: 1933-1947; doi:10.1093/nar/22.11.1933 [Abstract] [Print PDF] [Request Permissions]  

MOLECULAR BIOLOGY:

Shin-ichiro Mitsunaga, Raymond L. Rodriguez, and Junji Yamaguchi

Sequence-specific interactions of a nuclear protein factor with the promoter region of a rice gene for -amylase, RAmy3D
Nucl. Acids Res. 1994 22: 1948-1953; doi:10.1093/nar/22.11.1948 [Abstract] [Print PDF] [Request Permissions]  

Dennis Linton, Jonathan P. Clewley, André Burnens, Robert J. Owen, and John Stanley

An intervening sequence (IVS) in the 16S rRNA gene of the eubacterium Helicobacter canis
Nucl. Acids Res. 1994 22: 1954-1958; doi:10.1093/nar/22.11.1954 [Abstract] [Print PDF] [Request Permissions]  

Reuven Agami, Radi Aly, Segula Halman, and Michal Shapira

Functional analysis of cis-acting DNA elements required for expression of the SL RNA gene in the parasitic protozoan Leishmania amazonensis
Nucl. Acids Res. 1994 22: 1959-1965; doi:10.1093/nar/22.11.1959 [Abstract] [Print PDF] [Request Permissions]  

Hua Xiao, John T. Lis, Hua Xiao, Jack Greenblatt, and James D. Friesen

The upstream activator CTF/NF1 and RNA polymerase II share a common element involved in transcriptional activation
Nucl. Acids Res. 1994 22: 1966-1973; doi:10.1093/nar/22.11.1966 [Abstract] [Print PDF] [Request Permissions]  

Guillaume Chanfreau, Pierre Legrain, Bernard Dujon, and Alain Jacquier

Interaction between the first and last nucleotides of pre-mRNA introns is a determinant of 3' splice site selection in S.cerevisiae
Nucl. Acids Res. 1994 22: 1981-1987; doi:10.1093/nar/22.11.1981 [Abstract] [Print PDF] [Request Permissions]  

Fabrice Bovia, Nazarena Bui, and Katharina Strub

The heterodimeric subunit SRP9/14 of the signal recognition particle functions as permuted single polypeptide chain
Nucl. Acids Res. 1994 22: 2028-2035; doi:10.1093/nar/22.11.2028 [Abstract] [Print PDF] [Request Permissions]  

Kikukatsu Ito, Ken-ichi Tsutsumi, Takejiro Kuzumaki, Paul F. Gomez, Kaoru Otsu, and Kiichi Ishikawa

A novel growth-inducible gene that encodes a protein with a conserved cold-shock domain
Nucl. Acids Res. 1994 22: 2036-2041; doi:10.1093/nar/22.11.2036 [Abstract] [Print PDF] [Request Permissions]  

Richard P. Bowater, Fareed Aboul-ela, and David M.J. Lilley

Large-scale opening of A+T rich regions within supercoiled DNA molecules is suppressed by salt
Nucl. Acids Res. 1994 22: 2042-2050; doi:10.1093/nar/22.11.2042 [Abstract] [Print PDF] [Request Permissions]  

Zoltan Sandor and Anders Bredberg

Repair of triple helix directed psoralen adducts in human cells
Nucl. Acids Res. 1994 22: 2051-2056; doi:10.1093/nar/22.11.2051 [Abstract] [Print PDF] [Request Permissions]  

Gavin D. Recchia, H.W. Stokes, and Ruth M. Hall

Characterisation of specific and secondary recombination sites recognised by the integron DNA integrase
Nucl. Acids Res. 1994 22: 2071-2078; doi:10.1093/nar/22.11.2071 [Abstract] [Print PDF] [Request Permissions]  

Wolfgang Goedecke, Petra Pfeiffer, and Walter Vielmetter

Nonhomologous DNA end joining in Schizosaccharomyces pombe efficiently eliminates DNA double-strand-breaks from haploid sequences
Nucl. Acids Res. 1994 22: 2094-2101; doi:10.1093/nar/22.11.2094 [Abstract] [Print PDF] [Request Permissions]  

Yongmin Yang and Rodney D. Adam

Allele-specific expression of a variant-specific surface protein (VSP) of Giardia Iambiia
Nucl. Acids Res. 1994 22: 2102-2108; doi:10.1093/nar/22.11.2102 [Abstract] [Print PDF] [Request Permissions]  

Xiaozhuo Chen, Yunsheng Li, Keyong Xiong, and Thomas E. Wagner

A self-initiating eukaryotic transient gene expression system based on cotransfection of bacteriophage T7 RNA polymerase and DNA vectors containing a T7 autogene
Nucl. Acids Res. 1994 22: 2114-2120; doi:10.1093/nar/22.11.2114 [Abstract] [Print PDF] [Request Permissions]  

Alexander Jacob, Shalini Budhiraja, Xiaobing Qian, Derek Clevidence, Robert H. Costa, and Ronald R. Reichel

Retinoic acid-mediated activation of HNF-3 during EC stem cell differentiation
Nucl. Acids Res. 1994 22: 2126-2133; doi:10.1093/nar/22.11.2126 [Abstract] [Print PDF] [Request Permissions]  

Patricia G. McCaffrey, Peter K. Kim, Viia E. Valge-Archer, Ranjan Sen, and Anjana Rao

Cyclosporin A sensitivity of the NF-B site of the IL2R promoter in untransformed murine T cells
Nucl. Acids Res. 1994 22: 2134-2142; doi:10.1093/nar/22.11.2134 [Abstract] [Print PDF] [Request Permissions]  

Eiji Shinya and Takashi Shimada

Identification of two initiator elements in the bidirectional promoter of the human dihydrofolate reductase and mismatch repair protein 1 genes
Nucl. Acids Res. 1994 22: 2143-2149; doi:10.1093/nar/22.11.2143 [Abstract] [Print PDF] [Request Permissions]  

Indu Mahadevan and Indira Ghosh

Analysis of E.coli promoter structures using neural networks
Nucl. Acids Res. 1994 22: 2158-2165; doi:10.1093/nar/22.11.2158 [Abstract] [Print PDF] [Request Permissions]  

RNA:

Christine Schüll and Hildburg Beier

Three Tetrahymena tRNA^Gln isoacceptors as tools for studying unorthodox codon recognition and codon context effects during protein synthesis in vitro
Nucl. Acids Res. 1994 22: 1974-1980; doi:10.1093/nar/22.11.1974 [Abstract] [Print PDF] [Request Permissions]  

Johannes Köller, Gesa Nörskau, Anne S. Paul, Kenneth Stuart, and H.Ulrich Göringer

Different Trypanosoma brucei guide RNA molecules associate with an identical complement of mitochondrial proteins in vitro
Nucl. Acids Res. 1994 22: 1988-1995; doi:10.1093/nar/22.11.1988 [Abstract] [Print PDF] [Request Permissions]  

Kelly P. Williams, Hiroshi Imahori, Denise N. Fujimoto, and Tan Inoue

Selection of novel forms of a functional domain within the Tetrahymena ribozyme
Nucl. Acids Res. 1994 22: 2003-2009; doi:10.1093/nar/22.11.2003 [Abstract] [Print PDF] [Request Permissions]  

John V. Moran, Kirk L. Mecklenburg, Philip Sass, Scott M. Belcher, Donna Mahnke, Alfred Lewin, and Philip Perlman

Splicing defective mutants of the COXI gene of yeast mitochondrial DNA: initial definition of the maturase domain of the group II intron AI2
Nucl. Acids Res. 1994 22: 2057-2064; doi:10.1093/nar/22.11.2057 [Abstract] [Print PDF] [Request Permissions]  

Richard Stahl, Sophie Sun, Yvan L'Homme, Troy Ketela, and Gregory G. Brown

RNA editing of transcripts of a chimeric mitochondrial gene associated with cytoplasmic male-sterility in Brassica
Nucl. Acids Res. 1994 22: 2109-2113; doi:10.1093/nar/22.11.2109 [Abstract] [Print PDF] [Request Permissions]  

Eugene V. Koonin, Peer Bork, and Chris Sander

A novel RNA-binding motif in omnipotent suppressors of translation termination, ribosomal proteins and a ribosome modification enzyme?
Nucl. Acids Res. 1994 22: 2166-2167; doi:10.1093/nar/22.11.2166 [Abstract] [Print PDF] [Request Permissions]  

CHEMISTRY:

Keith R. Fox

Formation of DNA triple helices incorporating blocks of G·GC and T·AT triplets using short acridine-linked oligonucleotides
Nucl. Acids Res. 1994 22: 2016-2021; doi:10.1093/nar/22.11.2016 [Abstract] [Print PDF] [Request Permissions]  

Marie-Laurence Fontanel, Hervé Bazin, and Robert Téoule

Sterical recognition by T₄ polynucleotide kinase of non-nucleosidic moieties 5'-attached to oligonucleotides
Nucl. Acids Res. 1994 22: 2022-2027; doi:10.1093/nar/22.11.2022 [Abstract] [Print PDF] [Request Permissions]  

Norbert O. Reich and Kim R. Sweetnam

Sequence-dependent effects on DNA stability resulting from guanosine replacements by inosine
Nucl. Acids Res. 1994 22: 2089-2093; doi:10.1093/nar/22.11.2089 [Abstract] [Print PDF] [Request Permissions]  

METHODS:

Jagannath B. Lamture, Kenneth LBeattie, Barry E. Burke, Mitchell D. Eggers, Dan J. Ehrlich, Rick Fowler, Mark A. Hollis, Bernard B. Kosicki, Robert K. Reich, Sean R. Smith, Rajender S. Varma, and Michael E. Hogan

Direct detection of nucleic acid hybridization on the surface of a charge coupled device
Nucl. Acids Res. 1994 22: 2121-2125; doi:10.1093/nar/22.11.2121 [Abstract] [Print PDF] [Request Permissions]  

Darren G. Monckton and Alec J. Jeffreys

Minisatellite isoalleles can be distinguished by single-stranded conformational polymorphism analysis in agarose gels
Nucl. Acids Res. 1994 22: 2155-2157; doi:10.1093/nar/22.11.2155 [Abstract] [Print PDF] [Request Permissions]  

Yao-Guang Liu and Robert F. Whittier

Rapid preparation of megabase plant DNA from nuclei in agarose plugs and microbeads
Nucl. Acids Res. 1994 22: 2168-2169; doi:10.1093/nar/22.11.2168 [Print PDF] [Request Permissions]  

Yutaka Takarada

Highly sensitive and specific amplification by primer digestion
Nucl. Acids Res. 1994 22: 2170-2172; doi:10.1093/nar/22.11.2170 [Print PDF] [Request Permissions]  

Elaine R. Mardis

High-throughput detergent extraction of M13 subclones for fluorescent DNA sequencing
Nucl. Acids Res. 1994 22: 2173-2175; doi:10.1093/nar/22.11.2173 [Print PDF] [Request Permissions]  

Cornelis Vink, Martin Banks, Richard Bethell, and Ronald H.A. PIasterk

A high-throughput, non-radioactive microtiter plate assay for activity of the human immunodeficiency virus integrase protein
Nucl. Acids Res. 1994 22: 2176-2177; doi:10.1093/nar/22.11.2176 [Print PDF] [Request Permissions]  

Corrigendum:

K.I. Sørensen

Conformational heterogeneity in the Salmonella typhimurium pyrC and pyrD leader mRNAs produced in vivo
Nucl. Acids Res. 1994 22: 2180; doi:10.1093/nar/22.11.2180 [Abstract] [Print PDF] [Request Permissions]  

Author index:

Author index
Nucl. Acids Res. 1994 22: 2179; doi:10.1093/nar/22.11.2179 [Print PDF] [Request Permissions]  

ENZYMOLOGY:

Martin Häring, Helga Rüdiger, Bruce Demple, Serge Boiteux, and Bernd Epe

Recognition of oxidized abasic sites by repair endonucleases
Nucl. Acids Res. 1994 22: 2010-2015; doi:10.1093/nar/22.11.2010 [Abstract] [Print PDF] [Request Permissions]  

Ramn Díaz Orejas, Günter Ziegelin, Rudi Lurz, and Erich Lanka

Phage P4 DNA replication in vitro
Nucl. Acids Res. 1994 22: 2065-2070; doi:10.1093/nar/22.11.2065 [Abstract] [Print PDF] [Request Permissions]  

Raymond Bergan, Yvette Connell, Brigid Fahmy, Edward Kyle, and Len Neckers

Aptameric inhibition of p210^bcr-abl tyrosine kinase autophosphorylation by oligodeoxynucleotides of defined sequence and backbone structure
Nucl. Acids Res. 1994 22: 2150-2154; doi:10.1093/nar/22.11.2150 [Abstract] [Print PDF] [Request Permissions]  

GENOME STRUCTURE AND MAPPING:

Giuseppe Biamonti, Matteo Ruggiu, Salvatore Saccone, Giuliano Della Valle, and Silvano Riva

Two homologous genes, originated by duplication, encode the human hnRNP proteins A2 and A1
Nucl. Acids Res. 1994 22: 1996-2002; doi:10.1093/nar/22.11.1996 [Abstract] [Print PDF] [Request Permissions]  

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