Nucl. Acids Res. -- Table of Contents (22 [12, June 25 1994])

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Contents: Volume 22, Number 12    25 June 1994    [Index by Author]

       COMPUTATIONAL BIOLOGY

       SURVEY AND SUMMARY

       MOLECULAR BIOLOGY

       RNA

       CHEMISTRY

       METHODS

       Corrigenda

       Author index

       EDITORIAL

       ENZYMOLOGY

       GENOME STRUCTURE AND MAPPING

       STRUCTURAL BIOLOGY

Other Issues:

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COMPUTATIONAL BIOLOGY:

Laurent Duret, Dominique Mouchiroud, and Manolo Gouy: HOVERGEN: a database of homologous vertebrate genes
Nucl. Acids Res. 1994 22: 2360-2365; doi:10.1093/nar/22.12.2360 [Abstract] [Print PDF] [Request Permissions]

SURVEY AND SUMMARY:

Patrick A. Limbach, Pamela F. Crain, and James A. McCloskey: Summary: the modified nucleosides of RNA
Nucl. Acids Res. 1994 22: 2183-2196; doi:10.1093/nar/22.12.2183 [Abstract] [Print PDF] [Request Permissions]

MOLECULAR BIOLOGY:

Manfred Suckow, Anup Madan, Brigitte Kisters-Woike, Brigitte von Wilcken-Bergmann, and Benno Müller-Hill: Creating new DNA binding specificities in the yeast transcriptional activator GCN4 by combining selected amino acid substitutions
Nucl. Acids Res. 1994 22: 2198-2208; doi:10.1093/nar/22.12.2198 [Abstract] [Print PDF] [Request Permissions]

Satoko Yoshizawa, Takuya Ueda, Yoshiharu Ishido, Kin-ichiro Miura, Kimitsuna Watanabe, and Ichiro Hirao: Nuclease resistance of an extraordinarily thermostable mini-hairpin DNA fragment, d(GCGAAGC) and its application to in vitro protein synthesis
Nucl. Acids Res. 1994 22: 2217-2221; doi:10.1093/nar/22.12.2217 [Abstract] [Print PDF] [Request Permissions]

Yves Quentin: A master sequence related to a free left Alu monomer (FLAM) at the origin of the B1 family in rodent genomes
Nucl. Acids Res. 1994 22: 2222-2227; doi:10.1093/nar/22.12.2222 [Abstract] [Print PDF] [Request Permissions]

Jean-Marc Zingg, Gustavo Pedraza-Alva, and Jean-Pierre Jost: MyoD1 promoter autoregulation is mediated by two proximal E-boxes
Nucl. Acids Res. 1994 22: 2234-2241; doi:10.1093/nar/22.12.2234 [Abstract] [Print PDF] [Request Permissions]

Sabine Mai and Annika Jalava: C-Myc binds to 5' flanking sequence motifs of the dihydrofolate reductase gene in cellular extracts: role in proliferation
Nucl. Acids Res. 1994 22: 2264-2273; doi:10.1093/nar/22.12.2264 [Abstract] [Print PDF] [Request Permissions]

Mario Bigioni, Franco Zunino, and Giovanni Capranico: Base mutation analysis of topoisomerase II-idarubicin-DNA ternary complex formation. Evidence for enzyme subunit cooperativity in DNA cleavage
Nucl. Acids Res. 1994 22: 2274-2281; doi:10.1093/nar/22.12.2274 [Abstract] [Print PDF] [Request Permissions]

Janine Huet, Christine Conesa, Nathalie Manaud, Nathalie Chaussivert, and André Sentenac: Interactions between yeast TFIIIB components
Nucl. Acids Res. 1994 22: 2282-2288; doi:10.1093/nar/22.12.2282 [Abstract] [Print PDF] [Request Permissions]

Lalji Singh, Shirly G. Panicker, Raghavender Nagaraj, and Kshitish C. Majumdar: Banded krait minor-satellite (Bkm)-associated Y chromosome-specific repetitive DNA in mouse
Nucl. Acids Res. 1994 22: 2289-2295; doi:10.1093/nar/22.12.2289 [Abstract] [Print PDF] [Request Permissions]

Keith A. Grimaldi, Simon R. McAdam, Robert L. Souhami, and John A. Hartley: DNA damage by anti-cancer agents resolved at the nucleotide level of a single copy gene: evidence for a novel binding site for cisplatin in cells
Nucl. Acids Res. 1994 22: 2311-2317; doi:10.1093/nar/22.12.2311 [Abstract] [Print PDF] [Request Permissions]

Tamas Gaal, Lin Rao, Shawn T. Estrem, Jin Yang, Roger M. Wartell, and Richard L. Gourse: Localization of the intrinsically bent DNA region upstream of the E.coli rrnB P1 promoter
Nucl. Acids Res. 1994 22: 2344-2350; doi:10.1093/nar/22.12.2344 [Abstract] [Print PDF] [Request Permissions]

John J. Caterina, David Donze, Chiao-Wang Sun, Dominic J. Ciavatta, and Tim M. Townes: Cloning and functional characterization of LCR-F1: a bZIP transcription factor that activates erythroid-specific, human globin gene expression
Nucl. Acids Res. 1994 22: 2383-2391; doi:10.1093/nar/22.12.2383 [Abstract] [Print PDF] [Request Permissions]

Christopher N. Hahn, David M. Kerry, John L. Omdahl, and Brian K. May: Identification of a vitamin D responsive element in the promoter of the rat cytochrome P450₂₄ gene
Nucl. Acids Res. 1994 22: 2410-2416; doi:10.1093/nar/22.12.2410 [Abstract] [Print PDF] [Request Permissions]

Peter J. Gruber, Adrian Torres-Rosado, Michael L. Wolak, and Todd Left: Apo CIII gene transcription is regulated by a cytokine inducible NF- ${chi}$ B element
Nucl. Acids Res. 1994 22: 2417-2422; doi:10.1093/nar/22.12.2417 [Abstract] [Print PDF] [Request Permissions]

RNA:

Christian Baron, Christine Sturchler, Xin-Qi Wu, Hans J. Gross, Alain Krol, and August Böck: Eukaryotic selenocysteine inserting tRNA species support selenoprotein synthesis in Escherichia coli
Nucl. Acids Res. 1994 22: 2228-2233; doi:10.1093/nar/22.12.2228 [Abstract] [Print PDF] [Request Permissions]

Sten Larsson, Graham Hotchkiss, Michael Andäng, Tommy Nyholm, José Inzunza, Irma Jansson, and Lars Ährlund-Richter: Reduced ß2-microglobulin mRNA levels in transgenic mice expressing a designed hammerhead ribozyme
Nucl. Acids Res. 1994 22: 2242-2248; doi:10.1093/nar/22.12.2242 [Abstract] [Print PDF] [Request Permissions]

Lori Pearson, C.-h.B. Chen, Richard P. Gaynor, and David S. Sigman: Footprinting RNA-protein complexes following gel retardation assays: application to the R-17-procoat-RNA and tat-TAR interactions
Nucl. Acids Res. 1994 22: 2255-2263; doi:10.1093/nar/22.12.2255 [Abstract] [Print PDF] [Request Permissions]

Edwin ten Dam, Ian Brierley, Stephen Inglis, and Cornelis Pleij: Identification and analysis of the pseudoknot-containing gag-pro ribosomal frameshift signal of simian retrovirus-1
Nucl. Acids Res. 1994 22: 2304-2310; doi:10.1093/nar/22.12.2304 [Abstract] [Print PDF] [Request Permissions]

Toshifumi Tsukahara, Celeste Casciato, and David M. Helfman: Alternative splicing of ß-tropomyosin pre-mRNA: multiple cis-elements can contribute to the use of the 5'- and 3'-splice sites of the nonmuscle/smooth muscle exon 6
Nucl. Acids Res. 1994 22: 2318-2325; doi:10.1093/nar/22.12.2318 [Abstract] [Print PDF] [Request Permissions]

Shaohui Wang and Eric T. Kool: Circular RNA oligonucleotides. Synthesis, nucleic acid binding properties, and a comparison with circular DNAs
Nucl. Acids Res. 1994 22: 2326-2333; doi:10.1093/nar/22.12.2326 [Abstract] [Print PDF] [Request Permissions]

Zuwei Qian and Jeffrey Wilusz: GRSF-1: a poly(A)⁺ mRNA binding protein which interacts with a conserved G-rich element
Nucl. Acids Res. 1994 22: 2334-2343; doi:10.1093/nar/22.12.2334 [Abstract] [Print PDF] [Request Permissions]

Karim Bouhidel, Christophe Terzian, and Hubert Pinon: The full-length transcript of the I factor, a LINE element of Drosophila melanogaster, is a potential bicistronic RNA messenger
Nucl. Acids Res. 1994 22: 2370-2374; doi:10.1093/nar/22.12.2370 [Abstract] [Print PDF] [Request Permissions]

Robert B. Denman, Marilyn Smedman, Weina Ju, Richard Rubenstein, Anna Potempska, and David L. Miller: Ribozyme mediated degradation of ß-amyloid peptide precursor mRNA in COS-7 cells
Nucl. Acids Res. 1994 22: 2375-2382; doi:10.1093/nar/22.12.2375 [Abstract] [Print PDF] [Request Permissions]

CHEMISTRY:

Daniel C. Capaldi and Colin B. Reese: Use of the 1-(2-fluorophenyl)-4-methoxypiperidin-4-yl (Fpmp) and related protecting groups in oligoribonucleotide synthesis: stability of internucleotide linkages to aqueous acid
Nucl. Acids Res. 1994 22: 2209-2216; doi:10.1093/nar/22.12.2209 [Abstract] [Print PDF] [Request Permissions]

Carleen Cullinane, Suzanne M. Cutts, Anne van Rosmalen, and Don R. Phillips: Formation of adriamycin-DNA adducts in vitro
Nucl. Acids Res. 1994 22: 2296-2303; doi:10.1093/nar/22.12.2296 [Abstract] [Print PDF] [Request Permissions]

Sergei M. Gryaznov, Ronald Schultz, Surendra K. Chaturvedi, and Robert L. Letsinger: Enhancement of selectivity in recognition of nucleic acids via chemical autoligation
Nucl. Acids Res. 1994 22: 2366-2369; doi:10.1093/nar/22.12.2366 [Abstract] [Print PDF] [Request Permissions]

Ekaterina V. Vyazovkina, Elena V. Savchenko, Sergei G. Lokhov, Joachim W. Engels, Eric Wickstrom, and Alexander V. Lebedev: Synthesis of specific diastereomers of a DNA methylphosphonate heptamer, d(CpCpApApApCpA), and stability of base pairing with the normal DNA octamer d(TpGpTpTpTpGpGpC)
Nucl. Acids Res. 1994 22: 2404-2409; doi:10.1093/nar/22.12.2404 [Abstract] [Print PDF] [Request Permissions]

METHODS:

Mikhail F. Denissenko, Sundaresan Venkatachalam, Edith F. Yamasaki, and Altaf A. Wani: Assessment of DNA damage and repair in specific genomic regions by quantitative immuno-coupled PCR
Nucl. Acids Res. 1994 22: 2351-2359; doi:10.1093/nar/22.12.2351 [Abstract] [Print PDF] [Request Permissions]

Alexey Fomenkov, Jian-ping Xiao, Deborah Dila, Elisabeth Raleigh, and Shuang-yong Xu: The ‘endo-blue method’ for direct cloning of restriction endonuclease genes in E.coli
Nucl. Acids Res. 1994 22: 2399-2403; doi:10.1093/nar/22.12.2399 [Abstract] [Print PDF] [Request Permissions]

Gina L. Costa and Michael P. Weiner: Polishing with T4 or Pfu polymerase increases the efficiency of cloning of PCR fragments
Nucl. Acids Res. 1994 22: 2423; doi:10.1093/nar/22.12.2423 [Print PDF] [Request Permissions]

C.Bruce Bagwell, Mark E.Munson, Ronald L. Christensen, and Edmund J. Lovett: A new homogeneous assay system for specific nucleic acid sequences: poly-dA and poly-A detection
Nucl. Acids Res. 1994 22: 2424-2425; doi:10.1093/nar/22.12.2424 [Print PDF] [Request Permissions]

Atsushi Higashitani, Nahoko Higashitani, Seiichi Yasuda, and Kensuke Horiuchi: A general and fast method for mapping mutations on the Escherichia coli chromosome
Nucl. Acids Res. 1994 22: 2426-2427; doi:10.1093/nar/22.12.2426 [Print PDF] [Request Permissions]

Shigui Zhu and Min Wu: Enrichment of DNA fragments for deleted sequences in human genome with nuclease S1 digestion and PCR amplification
Nucl. Acids Res. 1994 22: 2428-2429; doi:10.1093/nar/22.12.2428 [Print PDF] [Request Permissions]

Erik Westmanu and Roger Stromberg: Removal of f-butyldimethylsilyl protection in RNA-synthesis. Triethylamine trihydrofluoride (TEA, 3HF) is a more reliable alternative to tetrabutylammonium fluoride (TBAF)
Nucl. Acids Res. 1994 22: 2430-2431; doi:10.1093/nar/22.12.2430 [Print PDF] [Request Permissions]

Corrigenda:

P.J. Lopez, I. Iost, and M. Dreyfus: The use of a tRNA as a transcriptional reporter: the '17 late promoter is extremely efficient in Escherichia coil but its transcripts are poorly expressed
Nucl. Acids Res. 1994 22: 2434; doi:10.1093/nar/22.12.2434 [Abstract] [Print PDF] [Request Permissions]

F.M. Orson, B.M. Kinsey, and W.M. McShan: Linkage structures strongly influence the binding cooperativity of DNA intercalators conjugated to triplex forming oligonucleotides
Nucl. Acids Res. 1994 22: 2434; doi:10.1093/nar/22.12.2434-a [Abstract] [Print PDF] [Request Permissions]

Author index:

: Author index
Nucl. Acids Res. 1994 22: 2433; doi:10.1093/nar/22.12.2433 [Print PDF] [Request Permissions]

EDITORIAL:

: Short Reports
Nucl. Acids Res. 1994 22: 2181; doi:10.1093/nar/22.12.2181 [Print PDF] [Request Permissions]

ENZYMOLOGY:

Hye-Yeon Hwang and Jeongbin Yim: SolI, a novel isoschizomer of ,BamHI isolated from Streptoverticillium olivoverticillatum
Nucl. Acids Res. 1994 22: 2197; doi:10.1093/nar/22.12.2197 [Print PDF] [Request Permissions]

GENOME STRUCTURE AND MAPPING:

György Pósfai, Michael Koob, Zdenka Hradecná, Noaman Hasan, Marcin Filutowicz, and Waclaw Szybalski: In vivo excision and amplification of large segments of the Escherichia coli genome
Nucl. Acids Res. 1994 22: 2392-2398; doi:10.1093/nar/22.12.2392 [Abstract] [Print PDF] [Request Permissions]

STRUCTURAL BIOLOGY:

Edvards Liepinsh, Werner Leupin, and Gottfried Otting: Hydration of DNA in aqueous solution: NMR evidence for a kinetic destabilization of the minor groove hydration of d-(TTAA)₂ versus d-(AATT)₂ segments
Nucl. Acids Res. 1994 22: 2249-2254; doi:10.1093/nar/22.12.2249 [Abstract] [Print PDF] [Request Permissions]

Nucleic Acids Research