Nucl. Acids Res. -- Table of Contents (22 [13, July 11 1994])

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Contents: Volume 22, Number 13    11 July 1994    [Index by Author]

       SURVEY AND SUMMARY

       MOLECULAR BIOLOGY

       RNA

       Author index

       EDITORIAL

Other Issues:

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SURVEY AND SUMMARY:

Michele Stenico, Andrew T. Lloyd, and Paul M. Sharp: Codon usage in Caenorhabditis elegans: delineation of translational selection and mutational biases
Nucl. Acids Res. 1994 22: 2437-2446; doi:10.1093/nar/22.13.2437 [Abstract] [Print PDF] [Request Permissions]

MOLECULAR BIOLOGY:

Nanette van Loon, Douglas Miller, and John P. Murnane: Formation of extrachromosomal circular DNA in HeLa cells by nonhomologous recombination
Nucl. Acids Res. 1994 22: 2447-2452; doi:10.1093/nar/22.13.2447 [Abstract] [Print PDF] [Request Permissions]

Ru Liu, Joan Baillie, J.G. Patrick Sissons, and John H. Sinclair: The transcription factor YY1 binds to negative regulatory elements in the human cytomegalovirus major immediate early enhancer/promoter and mediates repression in nonpermissive cells
Nucl. Acids Res. 1994 22: 2453-2459; doi:10.1093/nar/22.13.2453 [Abstract] [Print PDF] [Request Permissions]

E. Nordhoff, F. Kirpekar, M. Karas, R. Cramer, S. Hahner, F. Hillenkamp, K. Kristiansen, P. Roepstorff, and A. Lezius: Comparison of IR- and UV-matrix-assisted laser desorption/ionization mass spectrometry of oligodeoxynucleotides
Nucl. Acids Res. 1994 22: 2460-2465; doi:10.1093/nar/22.13.2460 [Abstract] [Print PDF] [Request Permissions]

Gerd Vorbrueggen, Frank Kalkbrenner, Stephan Guehmann, and Karin Moelling: The carboxyterminus of human c-myb protein stimulates activated transcription in trans
Nucl. Acids Res. 1994 22: 2466-2475; doi:10.1093/nar/22.13.2466 [Abstract] [Print PDF] [Request Permissions]

Eugene V. Koonin: Prediction of an rRNA methyltransferase domain in human tumor-specific nucleolar protein P120
Nucl. Acids Res. 1994 22: 2476-2478; doi:10.1093/nar/22.13.2476 [Abstract] [Print PDF] [Request Permissions]

Drena L. Dobbs, Wen-Ling Shaiu, and Robert M. Benbow: Modular sequence elements associated with origin regions in eukaryotic chromosomal DNA
Nucl. Acids Res. 1994 22: 2479-2489; doi:10.1093/nar/22.13.2479 [Abstract] [Print PDF] [Request Permissions]

Rajvee Shah, Richard J. Bennett, and Stephen C. West: Activation of RuvC Holliday junction resolvase in vitro
Nucl. Acids Res. 1994 22: 2490-2497; doi:10.1093/nar/22.13.2490 [Abstract] [Print PDF] [Request Permissions]

Roel P. Funke, Alexander Kolchinsky, and Peter M. Gresshoff: High EDTA concentrations cause entrapment of small DNA molecules in the compression zone of pulsed field gels, resulting in smaller than expected insert sizes in YACs prepared from size selected DNA
Nucl. Acids Res. 1994 22: 2708-2709; doi:10.1093/nar/22.13.2708 [Print PDF] [Request Permissions]

L.A. Ellis, G.R. Taylor, R. Banks, and S. Baumberg: MutS binding protects heteroduplex DNA from exonuclease digestion in vitro: a simple method for detecting mutations
Nucl. Acids Res. 1994 22: 2710-2711; doi:10.1093/nar/22.13.2710 [Print PDF] [Request Permissions]

Françoise Cottrez, Claude Auriault, André Capron, and Hervé Groux: Quantitative PCR: validation of the use of a multispecific internal control
Nucl. Acids Res. 1994 22: 2712-2713; doi:10.1093/nar/22.13.2712 [Print PDF] [Request Permissions]

Alexei G. Basnakian and S.Jill James: A rapid and sensitive assay for the detection of DNA fragmentation during early phases of apoptosis
Nucl. Acids Res. 1994 22: 2714-2715; doi:10.1093/nar/22.13.2714 [Print PDF] [Request Permissions]

RNA:

Celia W.G. van Gelder, José P.H.M. Thijssen, Erik C.J. Klaassen, Christine Sturchler, Alain Krol, J. van Walther, and Ger J.M. Pruijn: Common structural features of the Ro RNP associated hY1 and hY5 RNAs
Nucl. Acids Res. 1994 22: 2498-2506; doi:10.1093/nar/22.13.2498 [Abstract] [Print PDF] [Request Permissions]

Vladimir Volloch, Bruce Schweitzer, and Sophia Rits: Ligation-mediated amplification of RNA from murine erythroid cells reveals a novel class of ß globin mRNA with an extended 5'-untranslated region
Nucl. Acids Res. 1994 22: 2507-2511; doi:10.1093/nar/22.13.2507 [Abstract] [Print PDF] [Request Permissions]

Qiurong Xao, Tyson V. Sharp, Ian W. Jeffrey, Marion C. James, Ger J.M. Pruijn, Walther J.van Venrooij, and Michael J. Clemens: The La antigen inhibits the activation of the interferoninducible protein kinase PKR by sequestering and unwinding double-stranded RNA
Nucl. Acids Res. 1994 22: 2512-2518; doi:10.1093/nar/22.13.2512 [Abstract] [Print PDF] [Request Permissions]

M.J. Pillaire, A. Margot, G. Villani, A. Sarasin, M. Defias, and A. Gentil: Mutagenesis in monkey cells of a vector containing a single d(GPG) cis-diamminedichloroplatinum(ll) adduct placed on codon 13 of the human H-ras proto-oncogen
Nucl. Acids Res. 1994 22: 2519-2524; doi:10.1093/nar/22.13.2519 [Abstract] [Print PDF] [Request Permissions]

Zhi-Fang Chou, Fan Chen, and Jeffrey Wilusz: Sequence and position requirements for uridylate-rich downstream elements of polyadenylation signals
Nucl. Acids Res. 1994 22: 2525-2531; doi:10.1093/nar/22.13.2525 [Abstract] [Print PDF] [Request Permissions]

Takashi Yamada, Koichiro Tamura, Tadanori Aimi, and Puttaporn Songsri: Self-splicing group I introns in eukaryotic viruses
Nucl. Acids Res. 1994 22: 2532-2537; doi:10.1093/nar/22.13.2532 [Abstract] [Print PDF] [Request Permissions]

Claude Philippe, Lionel Bénard, Flore Eyermann, Claire Cachia, Stanislav V. Kirillov, Claude Portier, Bernard Ehresmann, and Chantal Ehresmann: Structural elements of rpsO mRNA involved in the modulation of translational initiation and regulation of E.coli ribosomal protein S15
Nucl. Acids Res. 1994 22: 2538-2546; doi:10.1093/nar/22.13.2538 [Abstract] [Print PDF] [Request Permissions]

Sandra Cheesman, Sybil McAleese, Michael Goman, Delia Johnson, Paul Horrocks, Robert G. Ridley, and Brian J. Kilbey: The gene encoding topoisomerase II from Plasmodium falciparum
Nucl. Acids Res. 1994 22: 2547-2551; doi:10.1093/nar/22.13.2547 [Abstract] [Print PDF] [Request Permissions]

Toby J. Gibson and Julie D. Thompson: Detection of dsRNA-binding domains in RNA helicase A and Drosophila maleless: implications for monomeric RNA helicases
Nucl. Acids Res. 1994 22: 2552-2556; doi:10.1093/nar/22.13.2552 [Abstract] [Print PDF] [Request Permissions]

David Selinger, Patrick Brennwald, Steven Althoff, Claudia Reich, Byron Hann, Peter Walter, and Jo Ann Wise: Genetic and biochemical analysis of the fission yeast ribonucleoprotein particle containing a homolog of Srp54p
Nucl. Acids Res. 1994 22: 2557-2567; doi:10.1093/nar/22.13.2557 [Abstract] [Print PDF] [Request Permissions]

Indrikis Muiznieks and Walter Doerfler: The topology of the promoter of RNA polymerase II- and III-transcribed genes is modified by the methylation of 5'-CG-3' dinucleotides
Nucl. Acids Res. 1994 22: 2568-2575; doi:10.1093/nar/22.13.2568 [Abstract] [Print PDF] [Request Permissions]

Heidi J. Sofia, Valerie Burland, Donna L. Daniels, Guy Plunkett, III, and Frederick R. Blattner: Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes
Nucl. Acids Res. 1994 22: 2576-2586; doi:10.1093/nar/22.13.2576 [Abstract] [Print PDF] [Request Permissions]

Véronique Picard, Eva Ersdal-Badju, Aiqin Lu, and Susan Clark Bock: A rapid and efficient one-tube PCR-based mutagenesis technique using Pfu DNA polymerase
Nucl. Acids Res. 1994 22: 2587-2591; doi:10.1093/nar/22.13.2587 [Abstract] [Print PDF] [Request Permissions]

Clare E. Pritchard, Jane A. Grasby, François Hamy, Anthony M. Zacharek, Mohinder Singh, Jonathan Karn, and Michael J. Gait: Methylphosphonate mapping of phosphate contacts critical for RNA recognition by the human immunodeficiency virus tat and rev proteins
Nucl. Acids Res. 1994 22: 2592-2600; doi:10.1093/nar/22.13.2592 [Abstract] [Print PDF] [Request Permissions]

Wolfgang Wendler, Herbert Altmann, and Emst-Ludwig-Winnacker: Transcriptional activation of NFI/CTF1 depends on a sequence motif strongly related to the carboxyterminal domain of RNA polymerase II
Nucl. Acids Res. 1994 22: 2601-2603; doi:10.1093/nar/22.13.2601 [Abstract] [Print PDF] [Request Permissions]

Marek Kwiatkowski, Martina Samiotaki, Urpo Lamminmäki, Veli-Matti Mukkala, and Ulf Landegren: Solid-phase synthesis of chelate-labelled oligonucleotides: application in triple-color ligase-mediated gene analysis
Nucl. Acids Res. 1994 22: 2604-2611; doi:10.1093/nar/22.13.2604 [Abstract] [Print PDF] [Request Permissions]

Brad Stone and Walker Wharton: Targeted RNA fingerprinting: the cloning of differentiallyexpressed cDNA fragments enriched for members of the zinc finger gene family
Nucl. Acids Res. 1994 22: 2612-2618; doi:10.1093/nar/22.13.2612 [Abstract] [Print PDF] [Request Permissions]

Mark F. Kubik, Andrew W. Stephens, Dan Schneider, Richard A. Marlar, and Diane Tasset: High-affinity RNA ligands to human ${alpha}$ -thrombin
Nucl. Acids Res. 1994 22: 2619-2626; doi:10.1093/nar/22.13.2619 [Abstract] [Print PDF] [Request Permissions]

Greg R. Swenson and William E. Walden: Localization of an RNA binding element of the iron responsive element binding protein within a proteolytic fragment containing iron coordination ligands
Nucl. Acids Res. 1994 22: 2627-2633; doi:10.1093/nar/22.13.2627 [Abstract] [Print PDF] [Request Permissions]

Jonathan A. Eisen, Maria-Ines Benito, and Virginia Walbot: Sequence similarity of putative transposases links the maize Mutator autonomous element and a group of bacterial insertion sequences
Nucl. Acids Res. 1994 22: 2634-2636; doi:10.1093/nar/22.13.2634 [Abstract] [Print PDF] [Request Permissions]

Andrea B. Staubli and Peter B. Dervan: Sequence specificity of the non-natural pyrido[2,3-d]pyrimidine nucleoside in triple helix formation
Nucl. Acids Res. 1994 22: 2637-2642; doi:10.1093/nar/22.13.2637 [Abstract] [Print PDF] [Request Permissions]

Hélène Jacquemin-Sablon, Gérard Triqueneaux, Stéphane Deschamps, Marc le Maire, Jay Doniger, and F. Dautry: Nucleic acid binding and intracellular localization of unr, a protein with five cold shock domains
Nucl. Acids Res. 1994 22: 2643-2650; doi:10.1093/nar/22.13.2643 [Abstract] [Print PDF] [Request Permissions]

Gregory P. Copenhaver, Christopher D. Putnam, Michael L. Denton, and Craig S. Pikaard: The RNA polymerase I transcription factor UBF is a sequence-tolerant HMG-box protein that can recognize structured nucleic acids
Nucl. Acids Res. 1994 22: 2651-2657; doi:10.1093/nar/22.13.2651 [Abstract] [Print PDF] [Request Permissions]

Margret M.W. Mooren, Sybren S. Wijmenga, Gijs A. van der Marel, Jacques H. van Boom, and Cornells W. Hilbers: The solution structure of the circular trinucleotide cr(GpGpGp) determined by NMR and molecular mechanics calculation
Nucl. Acids Res. 1994 22: 2658-2666; doi:10.1093/nar/22.13.2658 [Abstract] [Print PDF] [Request Permissions]

T.K. Wyrzykiewicz and D.L. Cole: Sequencing of oligonucleotide phosphorothioates based on solid-supported desulfurization
Nucl. Acids Res. 1994 22: 2667-2669; doi:10.1093/nar/22.13.2667 [Abstract] [Print PDF] [Request Permissions]

G.Terrance Walker, James G. Nadeau, Patricia A. Spears, James L. Schram, Colleen M. Nycz, and Daryl D. Shank: Multiplex strand displacement amplification (SDA) and detection of DNA sequences from Mycobacterium tuberculosis and other mycobacteria
Nucl. Acids Res. 1994 22: 2670-2677; doi:10.1093/nar/22.13.2670 [Abstract] [Print PDF] [Request Permissions]

J.T. Rogers, J.L. Andriotakis, L. Lacroix, G.P. Durmowicz, K.D. Kasschau, and K.R. Bridges: Translational enhancement of H-ferritin mRNA by interleukin-1ß acts through 5' leader sequences distinct from the iron responsive element
Nucl. Acids Res. 1994 22: 2678-2686; doi:10.1093/nar/22.13.2678 [Abstract] [Print PDF] [Request Permissions]

Yoshihide Kanaoka and Hiroshi Nojima: SCR: novel human suppressors of cdc2/cdc13 mutants of Schizosaccharomyces pombe harbour motifs for RNA binding proteins
Nucl. Acids Res. 1994 22: 2687-2693; doi:10.1093/nar/22.13.2687 [Abstract] [Print PDF] [Request Permissions]

Honghao Yang and Peter W. Melera: A genetic polymorphism within the third poly(A) signal of the DHFR gene alters the polyadenylation pattern of DHFR transcripts in CHL cells
Nucl. Acids Res. 1994 22: 2694-2702; doi:10.1093/nar/22.13.2694 [Abstract] [Print PDF] [Request Permissions]

Terri Goss Kinzy, Tracy L. Ripmaster, and John L. Woolford, Jr: Multiple genes encode the translation elongation factor EF-1 ${lambda}$ in Saccharomyces cerevisiae
Nucl. Acids Res. 1994 22: 2703-2707; doi:10.1093/nar/22.13.2703 [Abstract] [Print PDF] [Request Permissions]

Author index:

: Author index
Nucl. Acids Res. 1994 22: 2717; doi:10.1093/nar/22.13.2717 [Print PDF] [Request Permissions]

EDITORIAL:

: Editorial
Nucl. Acids Res. 1994 22: 2435; doi:10.1093/nar/22.13.2435 [Print PDF] [Request Permissions]

Nucleic Acids Research

SURVEY AND SUMMARY:

MOLECULAR BIOLOGY:

RNA:

Author index:

EDITORIAL: