Nucl. Acids Res. -- Table of Contents (22 [20, October 11 1994])

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Contents: Volume 22, Number 20    11 October 1994    [Index by Author]

       COMPUTATIONAL BIOLOGY

       MOLECULAR BIOLOGY

       RNA

       CHEMISTRY

       METHODS

       Corrigendum

       Author index

       GENOME STRUCTURE AND MAPPING

       STRUCTURAL BIOLOGY

Other Issues:

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COMPUTATIONAL BIOLOGY:

Cathy Wu and Sailaja Shivakumar: Back-propagation and counter-propagation neural networks for phylogenetic classification of ribosomal RNA sequences
Nucl. Acids Res. 1994 22: 4291-4299; doi:10.1093/nar/22.20.4291 [Abstract] [Print PDF] [Request Permissions]

Stephen Brossette and Roger M. Wartell: A program for selecting DNA fragments to detect mutations by denaturing gel electrophoresis methods
Nucl. Acids Res. 1994 22: 4321-4325; doi:10.1093/nar/22.20.4321 [Abstract] [Print PDF] [Request Permissions]

MOLECULAR BIOLOGY:

Geneviève Gourdon, Jacqueline A. Sharpe, Dominic Wells, William G. Wood, and Douglas R. Higgs: Analysis of a 70 kb segment of DNA containing the human ${zeta}$ and ${alpha}$ -globin genes linked to their regulatory element (HS-40) in transgenic mice
Nucl. Acids Res. 1994 22: 4139-4147; doi:10.1093/nar/22.20.4139 [Abstract] [Print PDF] [Request Permissions]

Nicole A. Datson, Geoffrey M. Duyk, Gert-Jan B. van Ommen, and Johan T. Den Dunnen: Specific isolation of 3'-terminal exons of human genes by exon trapping
Nucl. Acids Res. 1994 22: 4148-4153; doi:10.1093/nar/22.20.4148 [Abstract] [Print PDF] [Request Permissions]

V. Larionov, N. Kouprina, N. Nikolaishvili, and M.A. Resnick: Recombination during transformation as a source of chimeric mammalian artificial chromosomes in yeast (YACs)
Nucl. Acids Res. 1994 22: 4154-4162; doi:10.1093/nar/22.20.4154 [Abstract] [Print PDF] [Request Permissions]

Arcady R. Mushegian, Herman K. Edskes, and Eugene V. Koonin: Eukaryotic RNAse H shares a conserved domain with caulimovirus proteins that facilitate translation of polycistronic RNA
Nucl. Acids Res. 1994 22: 4163-4166; doi:10.1093/nar/22.20.4163 [Abstract] [Print PDF] [Request Permissions]

Michael Lanzer, Derik de Bruin, Samuel P. Wertheimer, and Jeffrey V. Ravetch: Transcriptional and nucleosomal characterization of a subtelomeric gene cluster flanking a site of chromosomal rearrangements in Plasmodium falciparum
Nucl. Acids Res. 1994 22: 4176-4182; doi:10.1093/nar/22.20.4176 [Abstract] [Print PDF] [Request Permissions]

Claire Gaillard, Eric Cabannes, and François Strauss: Identity of the RNA-binding protein K of hnRNP particles with protein H16, a sequence-specific single strand DNAbinding protein
Nucl. Acids Res. 1994 22: 4183-4186; doi:10.1093/nar/22.20.4183 [Abstract] [Print PDF] [Request Permissions]

Matthias C. Huber, Franz X. Bosch, Albrecht E. Sippel, and Constanze Bonifer: Chromosomal position effects in chicken lysozyme gene transgenic mice are correlated with supression of DNase I hypersensitive site formation
Nucl. Acids Res. 1994 22: 4195-4201; doi:10.1093/nar/22.20.4195 [Abstract] [Print PDF] [Request Permissions]

Constanze Bonifer, Nikos Yannoutsos, Gudrun Krüger, Frank Grosveld, and Albrecht E. Sippel: Dissection of the locus control function located on the chicken lysozyme gene domain in transgenic mice
Nucl. Acids Res. 1994 22: 4202-4210; doi:10.1093/nar/22.20.4202 [Abstract] [Print PDF] [Request Permissions]

Marcin Filutowicz, Dona York, and Igor Levchenko: Cooperative binding of initiator protein to replication origin conferred by single amino acid substitution
Nucl. Acids Res. 1994 22: 4211-4215; doi:10.1093/nar/22.20.4211 [Abstract] [Print PDF] [Request Permissions]

Regan Fulton and Brian Van Ness: Selective synergy of immunoglobulin enhancer elements in B-cell development: a characteristic of kappa light chain enhancers, but not heavy chain enhancers
Nucl. Acids Res. 1994 22: 4216-4223; doi:10.1093/nar/22.20.4216 [Abstract] [Print PDF] [Request Permissions]

Alexander Mazin, Tatiana Timchenko, Josiane Ménissier-de Murcia, Valérie Schreiber, Jaime F. Angulo, Murcia Gilbert de, and Raymond Devoret: Kin17, a mouse nuclear zinc finger protein that binds preferentially to curved DNA
Nucl. Acids Res. 1994 22: 4335-4341; doi:10.1093/nar/22.20.4335 [Abstract] [Print PDF] [Request Permissions]

RNA:

Carmen Spycher, Adrian Streit, Branko Stefanovic, Daniel Albrecht, Tom H.Wittop Koning, and Daniel Schümperli: 3' End processing of mouse histone pre-mRNA: evidence for additional base-pairing between U7 snRNA and pre-mRNA
Nucl. Acids Res. 1994 22: 4023-4030; doi:10.1093/nar/22.20.4023 [Abstract] [Print PDF] [Request Permissions]

Matthias Gstaiger and Walter Schaffner: Strong transcriptional activators isolated from viral DNA by the ‘activator trap’, a novel selection system in mammalian cells
Nucl. Acids Res. 1994 22: 4031-4038; doi:10.1093/nar/22.20.4031 [Abstract] [Print PDF] [Request Permissions]

D. Loakes and D.M. Brown: 5-Nitroindole as an universal base analogue
Nucl. Acids Res. 1994 22: 4039-4043; doi:10.1093/nar/22.20.4039 [Abstract] [Print PDF] [Request Permissions]

Wen-Chieh Liao, John Ash, and Lee F. Johnson: Bidirectional promoter of the mouse thymidylate synthase gene
Nucl. Acids Res. 1994 22: 4044-4049; doi:10.1093/nar/22.20.4044 [Abstract] [Print PDF] [Request Permissions]

Andreas Missel and H.Ulrich Göringer: Trypanosoma brucei mitochondria contain RNA helicase activity
Nucl. Acids Res. 1994 22: 4050-4056; doi:10.1093/nar/22.20.4050 [Abstract] [Print PDF] [Request Permissions]

Monica Beltrame, Yves Henry, and David Tollervey: Mutational analysis of an essential binding site for the U3 snoRNA in the 5' external transcribed spacer of yeast pre-rRNA
Nucl. Acids Res. 1994 22: 4057-4065; doi:10.1093/nar/22.20.4057 [Abstract] [Print PDF] [Request Permissions]

Mario Noyer-Weidner, Jörn Walter, Peter-Andreas Terschüren, Sunghee Chai, and Thomas A. Trautner: M.ø3TII: a new monospecific DNA (cytosine-C5) methyltransf erase with pronounced ami no acid sequence similarity to a family of adenine-N6-DNA-methyltransferases
Nucl. Acids Res. 1994 22: 4066-4072; doi:10.1093/nar/22.20.4066 [Abstract] [Print PDF] [Request Permissions]

Liang-Hu Qu, Monique Nicoloso, Bernard Michot, Marie-Claude Azum, Michèle Caizergues-Ferrer, Marie-Hélène Renalier, and Jean-Pierre Bachellerie: U21, a novel small nucleolar RNA with a 13 nt. complementarity to 28S rRNA, is encoded in an intron of ribosomal protein L5 gene in chicken and mammals
Nucl. Acids Res. 1994 22: 4073-4081; doi:10.1093/nar/22.20.4073 [Abstract] [Print PDF] [Request Permissions]

Eiji Sakashita and Hiroshi Sakamoto: Characterization of RNA binding specificity of the Drosophila sex-lethal protein by in vitroligand selection
Nucl. Acids Res. 1994 22: 4082-4086; doi:10.1093/nar/22.20.4082 [Abstract] [Print PDF] [Request Permissions]

Bong-Kyeong Oh and Norman R. Pace: Interaction of the 3'-end of tRNA with ribonuclease P RNA
Nucl. Acids Res. 1994 22: 4087-4094; doi:10.1093/nar/22.20.4087 [Abstract] [Print PDF] [Request Permissions]

Libin Ma, Ellen D. Siemssen, Mathieu H.M. Noteborn, and Alex J. van der Eb: The xeroderma pigmentosum group B protein ERCC3 produced in the baculovirus system exhibits DNA helicase activity
Nucl. Acids Res. 1994 22: 4095-4102; doi:10.1093/nar/22.20.4095 [Abstract] [Print PDF] [Request Permissions]

Comelis Vink, Ramon A.Puras Lutzke, and Ronald H.A. Plasterk: Formation of a stable complex between the human immunodeficiency virus integrase protein and viral DNA
Nucl. Acids Res. 1994 22: 4103-4110; doi:10.1093/nar/22.20.4103 [Abstract] [Print PDF] [Request Permissions]

Pradeep K. Patnaik, Xiangdong Fang, and George A.M. Cross: The region encompassing the procyclic acidic repetitive protein (PARP) gene promoter plays a role in plasmid DNA replication in Trypanosoma brucei
Nucl. Acids Res. 1994 22: 4111-4118; doi:10.1093/nar/22.20.4111 [Abstract] [Print PDF] [Request Permissions]

Tomohisa Kato, Jr, Takeshi Todo, Hitoshi Ayaki, Kanji Ishizaki, Takashi Morita, Sankar Mitra, and Mituo Ikenaga: Cloning of a marsupial DNA photolyase gene and the lack of related nucleotide sequences in placental mammals
Nucl. Acids Res. 1994 22: 4119-4124; doi:10.1093/nar/22.20.4119 [Abstract] [Print PDF] [Request Permissions]

Ramon A. Puras Lutzke, Cornells Vink, and Ronald H.A. Plasterk: Characterization of the minimal DNA-binding domain of the HIV integrase protein
Nucl. Acids Res. 1994 22: 4125-4131; doi:10.1093/nar/22.20.4125 [Abstract] [Print PDF] [Request Permissions]

David R. Wolstenholme, Ronald Okimoto, and Jane L. Macfarlane: Nucleotide correlations that suggest tertiary interactions in the TV-replacement loop-containing mitochondrial tRNAs of the nematodes, Caenorhabditis elegans and Ascaris suum
Nucl. Acids Res. 1994 22: 4300-4306; doi:10.1093/nar/22.20.4300 [Abstract] [Print PDF] [Request Permissions]

Gail Auger Rocheleau and Sarah A. Woodson: Requirements for self-splicing of a group I intron from Physarum polycephalum
Nucl. Acids Res. 1994 22: 4315-4320; doi:10.1093/nar/22.20.4315 [Abstract] [Print PDF] [Request Permissions]

CHEMISTRY:

Michael L. Metzker, Ramesh Raghavachari, Stephen Richards, Swanee E. Jacutin, Andrew Civitello, Kevin Burgess, and Richard A. Gibbs: Termination of DNA synthesis by novel 3'-modifieddeoxyribonucleoside 5'-triphosphates
Nucl. Acids Res. 1994 22: 4259-4267; doi:10.1093/nar/22.20.4259 [Abstract] [Print PDF] [Request Permissions]

Su-Hwi Hung, Qin Yu, Donald M. Gray, and Robert L. Ratliff: Evidence from CD spectra that d(purine)-r(pyrimidine) and r(purine)-d(pyrimidine) hybrids are in different structural classes
Nucl. Acids Res. 1994 22: 4326-4334; doi:10.1093/nar/22.20.4326 [Abstract] [Print PDF] [Request Permissions]

METHODS:

Julio Caubín, Teresa lglesias, Juan Bernal, Alberto Muñoz, Gabriel Márquez, José Luis Barbero, and Angel Zaballos: Isolation of genomic DNA fragments corresponding to genes modulated in vivo by a transcription factor
Nucl. Acids Res. 1994 22: 4132-4138; doi:10.1093/nar/22.20.4132 [Abstract] [Print PDF] [Request Permissions]

Theo T. Nikiforov, Robert B. Rendie, Philip Goelet, Yu-Hui Rogers, Michael L. Kotewicz, Stephen Anderson, George L. Trainor, and Michael R. Knapp: Genetic Bit Analysis: a solid phase method for typing single nucleotide polymorphisms
Nucl. Acids Res. 1994 22: 4167-4175; doi:10.1093/nar/22.20.4167 [Abstract] [Print PDF] [Request Permissions]

Barbara Freeh and Ernst Peterhans: RT-PCR: ‘background priming’ during reverse transcription
Nucl. Acids Res. 1994 22: 4342-4343; doi:10.1093/nar/22.20.4342 [Print PDF] [Request Permissions]

Joe S. Mymryk and Trevor K. Archer: Detection of transcription factor binding in vivo using lambda exonuclease
Nucl. Acids Res. 1994 22: 4344-4345; doi:10.1093/nar/22.20.4344 [Print PDF] [Request Permissions]

Andrew N. Billin and Stephen J. Poole: Use of interspecies hybrids to clone mutant alleles in Drosophila
Nucl. Acids Res. 1994 22: 4346-4347; doi:10.1093/nar/22.20.4346 [Print PDF] [Request Permissions]

Matthew J. Callow, Lance J. Ferrin, and Edward M. Rubin: Single base, site-directed mutagenesis of a 90 kilobasepair P1 clone
Nucl. Acids Res. 1994 22: 4348-4349; doi:10.1093/nar/22.20.4348 [Print PDF] [Request Permissions]

Ivan Habus and Sudhir Agrawal: Improvement in the synthesis of oligonucleotides of extended length by modification of detritylation step
Nucl. Acids Res. 1994 22: 4350-4351; doi:10.1093/nar/22.20.4350 [Print PDF] [Request Permissions]

Fawzy A. Saad, Birgit Halliger, Clemens R. Müller, Roland G. Roberts, and Gian A. Danieli: Single base substitutions are detected by double strand conformation analysis
Nucl. Acids Res. 1994 22: 4352-4353; doi:10.1093/nar/22.20.4352 [Print PDF] [Request Permissions]

E. Werle, C. Schneider, M. Renner, M. Völker, and W. Fiehn: Convenient single-step, one tube purification of PCR products for direct sequencing
Nucl. Acids Res. 1994 22: 4354-4355; doi:10.1093/nar/22.20.4354 [Print PDF] [Request Permissions]

Laurent Seroude and David L. Cribbs: Differential effects of detergents on enzyme and DNAbinding activities of a glutathione S-transferase - homeodomain fusion protein
Nucl. Acids Res. 1994 22: 4356-4357; doi:10.1093/nar/22.20.4356 [Print PDF] [Request Permissions]

Corrigendum:

: Corrigendum
Nucl. Acids Res. 1994 22: 4360; doi:10.1093/nar/22.20.4360 [Abstract] [Print PDF] [Request Permissions]

Author index:

: Author index
Nucl. Acids Res. 1994 22: 4359; doi:10.1093/nar/22.20.4359 [Print PDF] [Request Permissions]

GENOME STRUCTURE AND MAPPING:

V. Larionov, J. Graves, N. Kouprina, and M.A. Resnick: The role of recombination and RAD52 in mutation of chromosomal DNA transformed into yeast
Nucl. Acids Res. 1994 22: 4234-4241; doi:10.1093/nar/22.20.4234 [Abstract] [Print PDF] [Request Permissions]

STRUCTURAL BIOLOGY:

M.J.J. Blommers, U. Pieles, and A.De Mesmaeker: An approach to the structure determination of nucleic acid analogues hybridized to RNA. NMR studies of a duplex between 2'-OMe RNA and an oligonucleotide containing a single amide backbone modification
Nucl. Acids Res. 1994 22: 4187-4194; doi:10.1093/nar/22.20.4187 [Abstract] [Print PDF] [Request Permissions]

Thomas Thundat, David P. Allison, and Robert J. Warmack: Stretched DNA structures observed with atomic force microscopy
Nucl. Acids Res. 1994 22: 4224-4228; doi:10.1093/nar/22.20.4224 [Abstract] [Print PDF] [Request Permissions]

Noritaka Adachi, Hideo Ikeda, and Akihiko Kikuchi: Mutant isolation of mouse DNA topoisomerase ll ${alpha}$ in yeast
Nucl. Acids Res. 1994 22: 4229-4233; doi:10.1093/nar/22.20.4229 [Abstract] [Print PDF] [Request Permissions]

Nikolai B. Ulyanov, Karl D. Bishop, Valery I. Ivanov, and Thomas L. James: Tertiary base pair interactions in slipped loop-DNA: an NMR and model building study
Nucl. Acids Res. 1994 22: 4242-4249; doi:10.1093/nar/22.20.4242 [Abstract] [Print PDF] [Request Permissions]

Arnd Annweiler, Stefan Zwilling, and Thomas Wirth: Functional differences between the Oct2 transactivation domains determine the transactivation potential of individual Oct2 isoforms
Nucl. Acids Res. 1994 22: 4250-4258; doi:10.1093/nar/22.20.4250 [Abstract] [Print PDF] [Request Permissions]

John L. Tonkinson and C.A. Stein: Patterns of intracellular compartmentalization, trafficking and acidification of 5x-fluorescein labeled phosphodiester and phosphorothioate oligodeoxynucleotides in HL60 cells
Nucl. Acids Res. 1994 22: 4268-4275; doi:10.1093/nar/22.20.4268 [Abstract] [Print PDF] [Request Permissions]

Leeanne S. Coles, Filomena Occhiodoro, Mathew A. Vadas, and M.Frances Shannon: A sequence-specific single-strand DNA binding protein that contacts repressor sequences in the human GM-CSF promoter
Nucl. Acids Res. 1994 22: 4276-4283; doi:10.1093/nar/22.20.4276 [Abstract] [Print PDF] [Request Permissions]

Giulia Piaggio, Licia Tomei, Carlo Toniatti, Raffaele De Francesco, Jutta Gerstner, and Riccardo Cortese: LFB1/HNF1 acts as a repressor of its own transcription
Nucl. Acids Res. 1994 22: 4284-4290; doi:10.1093/nar/22.20.4284 [Abstract] [Print PDF] [Request Permissions]

Olivier Zelphati, Jean-Louis Imbach, Nathalie Signoret, Gerald Zon, Bernard Rayner, and Lee Leserman: Antisense oligonucleotides in solution or encapsulated in immunoliposomes inhibit replication of HIV-1 by several different mechanisms
Nucl. Acids Res. 1994 22: 4307-4314; doi:10.1093/nar/22.20.4307 [Abstract] [Print PDF] [Request Permissions]

Nucleic Acids Research