Nucleic Acids Research

COMPUTATIONAL BIOLOGY:

Yasubumi Sakakibara, Michael Brown, Richard Hughey, I. Saira Mian, Kimmen Sjölander, Rebecca C. Underwood, and David Haussler

Stochastic context-free grammers for tRNA modeling
Nucl. Acids Res. 1994 22: 5112-5120; doi:10.1093/nar/22.23.5112 [Abstract] [Print PDF] [Request Permissions]  

MOLECULAR BIOLOGY:

lldiko Unk, Endre Kiss-Toth, and Imre Boros

Transcription factor AP-4 participates in activation of bovine leukemia virus long terminal repeat by p34 Tax
Nucl. Acids Res. 1994 22: 4872-4875; doi:10.1093/nar/22.23.4872 [Abstract] [Print PDF] [Request Permissions]  

Raffaella Faraonio, Giuseppina Minopoli, Antonio Porcellini, Francesco Costanzo, Filiberto Cimino, and Tommaso Russo

The DNA sequence encompassing the transcription start site of a TATA-less promoter contains enough information to drive neuron-specific transcription
Nucl. Acids Res. 1994 22: 4876-4883; doi:10.1093/nar/22.23.4876 [Abstract] [Print PDF] [Request Permissions]  

Lisa J. Walker, Randa B. Craig, Adrian L. Harris, and Ian D. Hickson

A role for the human DNA repair enzyme HAP1 in cellular protection against DNA damaging agents and hypoxic stress
Nucl. Acids Res. 1994 22: 4884-4889; doi:10.1093/nar/22.23.4884 [Abstract] [Print PDF] [Request Permissions]  

Cyril M. Sanders and Norman J. Maitland

Kinetic and equilibrium binding studies of the human papillomavirus type-16 transcription regulatory protein E2 interacting with core enhancer elements
Nucl. Acids Res. 1994 22: 4890-4897; doi:10.1093/nar/22.23.4890 [Abstract] [Print PDF] [Request Permissions]  

Bernd Martin, Rainer Renkawitz, and Marc Muller

Two silencing sub-domains of v-erbA synergize with each other, but not with RXR
Nucl. Acids Res. 1994 22: 4898-4905; doi:10.1093/nar/22.23.4898 [Abstract] [Print PDF] [Request Permissions]  

Jing-Jer Lin and Virginia A. Zakian

Isolation and characterization of two Saccharomyces cerevisiae genes that encode proteins that bind to (TG_1–3)_n single strand telomeric DNA in vitro
Nucl. Acids Res. 1994 22: 4906-4913; doi:10.1093/nar/22.23.4906 [Abstract] [Print PDF] [Request Permissions]  

Barbara Majello, Pasquale De Luca, Gustav Hagen, Guntram Suske, and Luigi Lania

Different members of the Sp1 multigene family exert opposite transcritional regulation of the long terminal repeat of HIV-1
Nucl. Acids Res. 1994 22: 4914-4921; doi:10.1093/nar/22.23.4914 [Abstract] [Print PDF] [Request Permissions]  

Elizabeth M. Furter-Graves, Benjamin D. Hall, and Rolf Furter

Role of a small RNA pol II subunit in TATA to transcription start site spacing
Nucl. Acids Res. 1994 22: 4932-4936; doi:10.1093/nar/22.23.4932 [Abstract] [Print PDF] [Request Permissions]  

Patrick Calsou and Bernard Salles

Properties of damage-dependent DNA incision by nucleotide excision repair in human cell-free extracts
Nucl. Acids Res. 1994 22: 4937-4942; doi:10.1093/nar/22.23.4937 [Abstract] [Print PDF] [Request Permissions]  

Françoise Laval

Expression of the E.coli fpg gene in mammalian cells reduces the mutagenicity of -rays
Nucl. Acids Res. 1994 22: 4943-4946; doi:10.1093/nar/22.23.4943 [Abstract] [Print PDF] [Request Permissions]  

Hongyun Chen, Matthew Bjerknes, Ravindra Kumar, and Ernest Jay

Determination of the optimal aligned spacing between the Shine – Dalgarno sequence and the translation initiation codon of Escherichia coli m RNAs
Nucl. Acids Res. 1994 22: 4953-4957; doi:10.1093/nar/22.23.4953 [Abstract] [Print PDF] [Request Permissions]  

Ying Jiang and Jay D. Gralla

RNA polymerase II phosphorylation: uncoupling from GAL4-VP16 directed open complex formation and transcription in a reconstituted system
Nucl. Acids Res. 1994 22: 4958-4962; doi:10.1093/nar/22.23.4958 [Abstract] [Print PDF] [Request Permissions]  

Xiping Niu and Mark J. Guiltinan

DNA binding specificity of the wheat bZIP protein EmBP-1
Nucl. Acids Res. 1994 22: 4969-4978; doi:10.1093/nar/22.23.4969 [Abstract] [Print PDF] [Request Permissions]  

Jeff Rogers and Julian Davies

The pseudodisaccharides: a novel class of group I intron splicing inhibitors
Nucl. Acids Res. 1994 22: 4983-4988; doi:10.1093/nar/22.23.4983 [Abstract] [Print PDF] [Request Permissions]  

Pieter A. Dijkwe, James P. Vaughn, and Joyce L. Hamlin

Replication initiation sites are distributed widely in the amplified CHO dihydrofolate reductase domain
Nucl. Acids Res. 1994 22: 4989-4996; doi:10.1093/nar/22.23.4989 [Abstract] [Print PDF] [Request Permissions]  

Hideki Nakashima, Yoko Shoji, Sang-Gun Kim, Jingoro Shimada, Yutaka Mizushima, Masahiko Ito, Naoki Yamamoto, and Hiroshi Takaku

Anti-human immunodeficiency virus type 1 activity of phosphorothioate analogs of oligodeoxynucleotides: penetration and localization of oligodeoxynucleotides in HIV-1-infected MOLT-4 cells
Nucl. Acids Res. 1994 22: 5004-5010; doi:10.1093/nar/22.23.5004 [Abstract] [Print PDF] [Request Permissions]  

Tim Dalton, Richard D. Palmiter, and Glen K. Andrews

Transcriptional induction of the mouse metallothionein-I gene in hydrogen peroxide-treated Hepa cells involves a composite major late transcription factor/antioxidant response element and metal response promoter elements
Nucl. Acids Res. 1994 22: 5016-5023; doi:10.1093/nar/22.23.5016 [Abstract] [Print PDF] [Request Permissions]  

Michael L. Nedved, Philip A. Gottlieb, and Gregory R. Moe

CD and DNA binding studies of a proline repeat-containing segment of the replication arrest protein Tus
Nucl. Acids Res. 1994 22: 5024-5030; doi:10.1093/nar/22.23.5024 [Abstract] [Print PDF] [Request Permissions]  

Barbara Wiesendanger, Renzo Lucchini, Theo Koller, and José M. Sogo

Replication fork barriers in the Xenopus rDNA
Nucl. Acids Res. 1994 22: 5038-5046; doi:10.1093/nar/22.23.5038 [Abstract] [Print PDF] [Request Permissions]  

Michael G. Fried and Gang Liu

Molecular sequestration stabilizes CAP–DNA complexes during polyacrylamide gel electrophoresis
Nucl. Acids Res. 1994 22: 5054-5059; doi:10.1093/nar/22.23.5054 [Abstract] [Print PDF] [Request Permissions]  

Robert L. Glaser and Allan C. Spradling

Unusual properties of genomic DNA molecules spanning the euchromatic – heterochromatic junction of a Drosophila minichromosome
Nucl. Acids Res. 1994 22: 5068-5075; doi:10.1093/nar/22.23.5068 [Abstract] [Print PDF] [Request Permissions]  

Jennifer L. Johnson and Alan McLachlan

Novel clustering of Sp1 transcription factor binding sites at the transcription initiation site of the human muscle phosphofructokinase P1 promoter
Nucl. Acids Res. 1994 22: 5085-5092; doi:10.1093/nar/22.23.5085 [Abstract] [Print PDF] [Request Permissions]  

Tong Wu, Tetsuo lkezono, C. William Angus, and James H. Shelhamer

Characterization of the promoter for the human 85 kDa cytosolic phospholipase A₂ gene
Nucl. Acids Res. 1994 22: 5093-5098; doi:10.1093/nar/22.23.5093 [Abstract] [Print PDF] [Request Permissions]  

Roderick Hori and Richard A. Firtel

Identification and characterization of multiple A/T-rich cisacting elements that control expression from Dictyostelium actin promoters: the Dictyostelium actin upstream activating sequence confers growth phase expression and has enhancer-like properties
Nucl. Acids Res. 1994 22: 5099-5111; doi:10.1093/nar/22.23.5099 [Abstract] [Print PDF] [Request Permissions]  

Carol M. Rubin, Catherine A. VandeVoort, Raymond L. Teplitz, and Carl W. Schmid

Alu repeated DNAs are differentially methylated in primate germ cells
Nucl. Acids Res. 1994 22: 5121-5127; doi:10.1093/nar/22.23.5121 [Abstract] [Print PDF] [Request Permissions]  

RNA:

Michael C. Willis, Karen A. LeCuyer, Kristen M. Meisenheimer, Olke C. Uhlenbeck, and Tad H. Koch

An RNA—protein contact determined by 5-bromouridine substitution, photocrosslinking and sequencing
Nucl. Acids Res. 1994 22: 4947-4952; doi:10.1093/nar/22.23.4947 [Abstract] [Print PDF] [Request Permissions]  

Helle Aurup, Angela Siebert, Fritz Benseler, David Williams, and Fritz Eckstein

Translation of 2'-modified mRNA in vitro and in vivo
Nucl. Acids Res. 1994 22: 4963-4968; doi:10.1093/nar/22.23.4963 [Abstract] [Print PDF] [Request Permissions]  

Joëlle Rudinger, Catherine Florentz, and Richard Giegé

Histidylation by yeast HisRS of tRNA or tRNA-like structure relies on residues–1 and 73 but is dependent on the RNA context
Nucl. Acids Res. 1994 22: 5031-5037; doi:10.1093/nar/22.23.5031 [Abstract] [Print PDF] [Request Permissions]  

Kiyoshi Shimizu, Hiroshi Handa, Susumu Nakada, and Kyosuke Nagata

Regulation of influenza virus RNA polymerase activity by cellular and viral factors
Nucl. Acids Res. 1994 22: 5047-5053; doi:10.1093/nar/22.23.5047 [Abstract] [Print PDF] [Request Permissions]  

Noriko Yuyama, Jun Ohkawa, Tetsuhiko Koguma, Makoto Shirai, and Kazunari Taira

A multifunctional expression vector for an anti-HIV-1 ribozyme that produces a 5'- and 3'-trimmed trans-acting ribozyme, targeted against HIV-1 RNA, and cis-acting ribozymes that are designed to bind to and thereby sequester frans-activator proteins such as Tat and Rev
Nucl. Acids Res. 1994 22: 5060-5067; doi:10.1093/nar/22.23.5060 [Abstract] [Print PDF] [Request Permissions]  

CHEMISTRY:

Igor G. Panyutin and Ronald D. Neumann

Sequence-specific DNA double-strand breaks induced by triplex froming ¹²⁵I labeled oligonucleotides
Nucl. Acids Res. 1994 22: 4979-4982; doi:10.1093/nar/22.23.4979 [Abstract] [Print PDF] [Request Permissions]  

Toshinori Suzuki, Shinzo Ohsumi, and Keisuke Makino

Mechanistic studies on depurination and apurinic site chain breakage in oligodeoxyribonucleotides
Nucl. Acids Res. 1994 22: 4997-5003; doi:10.1093/nar/22.23.4997 [Abstract] [Print PDF] [Request Permissions]  

Mathias K. Herrlein and Robert L. Letsinger

Selective chemical autoligation on a double-stranded DNA template
Nucl. Acids Res. 1994 22: 5076-5078; doi:10.1093/nar/22.23.5076 [Abstract] [Print PDF] [Request Permissions]  

METHODS:

Sung-Sick Woo, Jiming Jiang, Bikram S. Gill, Andrew H. Paterson, and Rod A. Wing

Construction and characterization of bacterial artificial chromosome library of Sorghum bicolor
Nucl. Acids Res. 1994 22: 4922-4931; doi:10.1093/nar/22.23.4922 [Abstract] [Print PDF] [Request Permissions]  

Shaun M. Heale, Lubomira I. Stateva, and Stephen G. Oliver

Introduction of YACs into intact yeast cells by a procedure which shows low levels of recombinagenicity and co-transformation
Nucl. Acids Res. 1994 22: 5011-5015; doi:10.1093/nar/22.23.5011 [Abstract] [Print PDF] [Request Permissions]  

P.S.N. Rowe, F. Francis, and J. Goulding

Rapid isolation of DNA sequences flanking microsatellite repeats
Nucl. Acids Res. 1994 22: 5135-5136; doi:10.1093/nar/22.23.5135 [Print PDF] [Request Permissions]  

Monica Beltrame, Yves Henry, and David Tollervey

Mutational analysis of an essential binding site for the U3 snoRNA in the 5' external transcribed spacer of yeast pre-rRNA
Nucl. Acids Res. 1994 22: 5139-5147; doi:10.1093/nar/22.23.5139 [Abstract] [Print PDF] [Request Permissions]  

Corrigendum:

K.L. Triman

The 16S ribosomal RNA mutation database (16SMDB)
Nucl. Acids Res. 1994 22: 5148-5150; doi:10.1093/nar/22.23.5148 [Abstract] [Print PDF] [Request Permissions]  

Erratum:

G. Scheidt, H. Weber, M. Graessmann, and A. Graessmann

Retraction: Are there two DNA metyltransferase gene families in plant? A new potential methyltransferase gene isolated from an Arabidopsis thaliana genomic library
Nucl. Acids Res. 1994 22: 5138; doi:10.1093/nar/22.23.5138 [Abstract] [Print PDF] [Request Permissions]  

M. Beltrame, Y. Hendry, and D. Tollervey

Mutational analysis of an essential binding site for the U3 snoRNA in the 5' external transcribed spacer of yeast pre-rRNA
Nucl. Acids Res. 1994 22: 5138; doi:10.1093/nar/22.23.5138-a [Abstract] [Print PDF] [Request Permissions]  

Author index:

Author Index
Nucl. Acids Res. 1994 22: 5137; doi:10.1093/nar/22.23.5137 [Print PDF] [Request Permissions]  

ENZYMOLOGY:

David Mu, Elisabeth Bertrand-Burggraf, Juch-Chin Huang, Bobert P.P. Fuchs, and Aziz Sancar

Human and E.coli excinucleases are affected differently by the sequence context of acetylaminofluorene–guanine adduct
Nucl. Acids Res. 1994 22: 4869-4871; doi:10.1093/nar/22.23.4869 [Abstract] [Print PDF] [Request Permissions]  

GENOME STRUCTURE AND MAPPING:

Jill Scott, charles Leeck, and James Forney

Analyiss of the micronuclear B type surface protein gene in Paramecium tetruaurelia
Nucl. Acids Res. 1994 22: 5079-5084; doi:10.1093/nar/22.23.5079 [Abstract] [Print PDF] [Request Permissions]  

STRUCTURAL BIOLOGY:

R. Ted West, Leoncio A. Garza, II, William R. Winchester, and Judith A. Walmsely

Conformation, hydrogen bonding and aggregate formation of guanosine 5'-monophosphate and guanosine in dimethylsulfoxide
Nucl. Acids Res. 1994 22: 5128-5134; doi:10.1093/nar/22.23.5128 [Abstract] [Print PDF] [Request Permissions]  

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