Nucl. Acids Res. -- Table of Contents (22 [3, February 11 1994])

Receive this page by email each issue: [Sign up for eTOCs]

Contents: Volume 22, Number 3    11 February 1994    [Index by Author]

       COMPUTATIONAL BIOLOGY

       MOLECULAR BIOLOGY

       RNA

       CHEMISTRY

       METHODS

       Corrigendum

       Errata

       Author index

       SHORT REPORTS

       STRUCTURAL BIOLOGY

Other Issues:

Find articles in this issue containing these words:

Front Matter (Print PDF) | Back Matter (Print PDF)

To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

COMPUTATIONAL BIOLOGY:

Christophe Lefévre and Joh-E. Ikeda: A fast word search algorithm for the representation of sequence similarity in genomic DNA
Nucl. Acids Res. 1994 22: 404-411; doi:10.1093/nar/22.3.404 [Abstract] [Print PDF] [Request Permissions]

Shugo Nakamura and Junta Doi: Dynamics of transfer RNAs analyzed by normal mode calculation
Nucl. Acids Res. 1994 22: 514-521; doi:10.1093/nar/22.3.514 [Abstract] [Print PDF] [Request Permissions]

MOLECULAR BIOLOGY:

Karla A. Henning, Carolyn Peterson, Randy Legerski, and Errol C. Friedberg: Cloning the Drosophila homolog of the xeroderma pigmentosum complementation group C gene reveals homology between the predicted human and Drosophila polypeptides and that encoded by the yeast RAD4 gene
Nucl. Acids Res. 1994 22: 257-261; doi:10.1093/nar/22.3.257 [Abstract] [Print PDF] [Request Permissions]

Henri G.A.M. van Luenen and Ronald H.A. Plasterk: Target site choice of the related transposable elements Tc1 and Tc3 of Caenorhabditis elegans
Nucl. Acids Res. 1994 22: 262-269; doi:10.1093/nar/22.3.262 [Abstract] [Print PDF] [Request Permissions]

Jessica T. Tyler, K.Elizabeth Allen, and Roger D. Everett: Mutation of a single lysine residue severely impairs the DNA recognition and regulatory functions of the VZV gene 62 transactivator protein
Nucl. Acids Res. 1994 22: 270-278; doi:10.1093/nar/22.3.270 [Abstract] [Print PDF] [Request Permissions]

Luca Falciola, Alastair I.H. Murchie, David M.J. Lilley, and Marco E. Bianchi: Mutational analysis of the DNA binding domain A of chromosomal protein HMG1
Nucl. Acids Res. 1994 22: 285-292; doi:10.1093/nar/22.3.285 [Abstract] [Print PDF] [Request Permissions]

Gary J. Sharples, Matthew C. Whitby, Lizanne Ryder, and Robert G. Lloyd: A mutation in helicase motif III of E.coli RecG protein abolishes branch migration of Holliday junctions
Nucl. Acids Res. 1994 22: 308-313; doi:10.1093/nar/22.3.308 [Abstract] [Print PDF] [Request Permissions]

Jan-Peter Kreivi and Göran Akusjärvi: Regulation of adenovirus alternative RNA splicing at the level of commitment complex formation
Nucl. Acids Res. 1994 22: 332-337; doi:10.1093/nar/22.3.332 [Abstract] [Print PDF] [Request Permissions]

Leila Maouche, Jean Pierre Cartron, and Stant Chretien: Different domains regulate the human erythropoietin receptor gene transcription
Nucl. Acids Res. 1994 22: 338-346; doi:10.1093/nar/22.3.338 [Abstract] [Print PDF] [Request Permissions]

Jacques Oberto, Sieghild Böhmer Sloan, and Robert A. Weisberg: A segment of the phage HK022 chromosome is a mosaic of other lambdoid chromosomes
Nucl. Acids Res. 1994 22: 354-356; doi:10.1093/nar/22.3.354 [Abstract] [Print PDF] [Request Permissions]

ShinWu Jeong and Arnold Stein: Micrococcal nuclease digestion of nuclei reveals extended nucleosome ladders having anomalous DNA lengths for chromatin assembled on non-replicating plasmids in transfected cells
Nucl. Acids Res. 1994 22: 370-375; doi:10.1093/nar/22.3.370 [Abstract] [Print PDF] [Request Permissions]

Isabel Rambaldi, Erzsebet Nagy Kovàcs, and Mark S. Featherstone: A proline-rich transcriptional activation domain in murine HOXD-4 (HOX-4.2)
Nucl. Acids Res. 1994 22: 376-382; doi:10.1093/nar/22.3.376 [Abstract] [Print PDF] [Request Permissions]

Chi-Ho Mak, Joan Strandtmann, and Lai-Chu Wu: The V(D)J recombination signal sequence and ${chi}$ B binding protein Rc binds DNA as dimers and forms multimeric structures with its DNA ligands
Nucl. Acids Res. 1994 22: 383-390; doi:10.1093/nar/22.3.383 [Abstract] [Print PDF] [Request Permissions]

Murielle Robert-Le Meur and Claude Portier: Polynucleotide phosphorylase of Escherichia coli induces the degradation of its RNase III processed messenger by preventing its translation
Nucl. Acids Res. 1994 22: 397-403; doi:10.1093/nar/22.3.397 [Abstract] [Print PDF] [Request Permissions]

Subrahmanyam S. Chirala, Qing Zhong, Wanzhi Huang, and Walid Al-Feel: Analysis of FAS3/ACC regulatory region of Saccharomyces cerevisiae: identification of a functional UAS_INO and sequences responsible for fatty acid mediated repression
Nucl. Acids Res. 1994 22: 412-418; doi:10.1093/nar/22.3.412 [Abstract] [Print PDF] [Request Permissions]

Mario Sirito, Qun Lin, Tapati Maity, and Michèle Sawadogo: Ubiquitous expression of the 43- and 44-kDa forms of transcription factor USF in mammalian cells
Nucl. Acids Res. 1994 22: 427-433; doi:10.1093/nar/22.3.427 [Abstract] [Print PDF] [Request Permissions]

Chris W. Lehman, Jonathan K. Trautman, and Dana Carroll: Illegitimate recombination in Xenopus: characterization of end-joined junctions
Nucl. Acids Res. 1994 22: 434-442; doi:10.1093/nar/22.3.434 [Abstract] [Print PDF] [Request Permissions]

Lawrence J. Peck, Magdalena Bartilson, and Joseph L. DeRisi: Bead-shift isolation of protein-DNA complexes on a 5S RNA gene
Nucl. Acids Res. 1994 22: 443-449; doi:10.1093/nar/22.3.443 [Abstract] [Print PDF] [Request Permissions]

Louise M. Perkins, Fernando E. Ramirez, Fernando E. Kumar, Chandra C. Kumar, Fiona J. Thomson, and Mike A. Clark: Activation of serum response element-regulated genes by lysophosphatidic acid
Nucl. Acids Res. 1994 22: 450-452; doi:10.1093/nar/22.3.450 [Abstract] [Print PDF] [Request Permissions]

Zhao-Yi Wang, Nobuyoshi Masaharu, Qing-Qing Qiu, Yasuo Takimato, and Thomas F. Deuel: An S1 nuclease-sensitive region in the first intron of human platelet-derived growth factor A-chain gene contains a negatively acting cell type-specific regulatory element
Nucl. Acids Res. 1994 22: 457-464; doi:10.1093/nar/22.3.457 [Abstract] [Print PDF] [Request Permissions]

Frank M. Orson, Berma M. Kinsey, and W.Michael McShan: Linkage structures strongly influence the binding cooperativity of DNA intercalators conjugated to triplex forming oligonucleotides
Nucl. Acids Res. 1994 22: 479-484; doi:10.1093/nar/22.3.479 [Abstract] [Print PDF] [Request Permissions]

Chantal Nault, Stéphane Veilleux, Louis Delbecchi, Danielle Bourgaux-Ramoisy, and Pierre Bourgaux: Intramolecular recombination in polymavirus DNA is controlled by promoter elements
Nucl. Acids Res. 1994 22: 485-491; doi:10.1093/nar/22.3.485 [Abstract] [Print PDF] [Request Permissions]

Yoshie Itoh-Lindstrom and Michael Leffak: Alteration of in vivo DNA synthesis in the alpha globin locus of chick embryo fibroblasts due to in vivo activity of Rous sarcoma virus pp60^src
Nucl. Acids Res. 1994 22: 498-505; doi:10.1093/nar/22.3.498 [Abstract] [Print PDF] [Request Permissions]

RNA:

Steven T. Gregory, Kathy R. Lieberman, and Albert E. Dahlberg: Mutations in the peptidyl transferase region of E.coli 23S rRNA affecting translational accuracy
Nucl. Acids Res. 1994 22: 279-284; doi:10.1093/nar/22.3.279 [Abstract] [Print PDF] [Request Permissions]

Edouard Bertrand, Raymond Pictet, and Thierry Grange: Can hammerhead ribozymes be efficient tools to inactivate gene function?
Nucl. Acids Res. 1994 22: 293-300; doi:10.1093/nar/22.3.293 [Abstract] [Print PDF] [Request Permissions]

Catherine Pachuk, Kyonggeun Yoon, Karin Moelling, and Leslie R. Coney: Selective cleavage of bcr-abl chimeric RNAs by a ribozyme targeted to non-contiguous sequences
Nucl. Acids Res. 1994 22: 301-307; doi:10.1093/nar/22.3.301 [Abstract] [Print PDF] [Request Permissions]

Anton Glück, Yaeta Endo, and Ira G. Wool: The ribosomal RNA identity elements for ricin and for ${alpha}$ -sarcin: mutations in the putative CG pair that closes a GAGA tetraloop
Nucl. Acids Res. 1994 22: 321-324; doi:10.1093/nar/22.3.321 [Abstract] [Print PDF] [Request Permissions]

Marcel F. Brink, Guido Brink, Martin Verbeet, and Herman A. de Boer: Spectinomycin interacts specifically with the residues G₁₀₆₄ and C₁₁₉₂ in 16S rRNA, thereby potentially freezing this molecule into an inactive conformation
Nucl. Acids Res. 1994 22: 325-331; doi:10.1093/nar/22.3.325 [Abstract] [Print PDF] [Request Permissions]

Kawori Wakita, Yoh-ichi Watanabe, Takashi Yokogawa, Yoshinori Kumazawa, Shingo Nakamura, Takuya Ueda, Kimitsuna Watanabe, and Kazuya Nishikawa: Higher-order structure of bovine mitochondrial tRNA^Phe lacking the ‘conserved’ GG and T ${Psi}$ CG sequences as inferred by enzymatic and chemical probing
Nucl. Acids Res. 1994 22: 347-353; doi:10.1093/nar/22.3.347 [Abstract] [Print PDF] [Request Permissions]

Gunnar Rosendahl and Stephen Douthwaite: The antibiotics micrococcin and thiostrepton interact directly with 23S rRNA nucleotides 1067A and 1095A
Nucl. Acids Res. 1994 22: 357-363; doi:10.1093/nar/22.3.357 [Abstract] [Print PDF] [Request Permissions]

Sen-Yung Hsieh, Pei-Ying Yang, Jonathan T. Ou, Chia-Ming Chu, and Yun-Fan Liaw: Polyadenylation of the mRNA of hepatitis delta virus is dependent on the structure of the nascent RNA and regulated by the small or large delta antigen
Nucl. Acids Res. 1994 22: 391-396; doi:10.1093/nar/22.3.391 [Abstract] [Print PDF] [Request Permissions]

Prema Narayan, Rachael L. Ludwiczak, Edward C. Goodwin, and Fritz M. Rottman: Context effects on N⁶-adenosine methylation sites in prolactin mRNA
Nucl. Acids Res. 1994 22: 419-426; doi:10.1093/nar/22.3.419 [Abstract] [Print PDF] [Request Permissions]

Gregory Hinkle, Detlef D. Leipe, Thomas A. Nerad, and Mitchell L. Sogin: The unusually long small subunit ribosomal RNA of Phreatamoeba balamuthi
Nucl. Acids Res. 1994 22: 465-469; doi:10.1093/nar/22.3.465 [Abstract] [Print PDF] [Request Permissions]

William H. McClain, Jay Schneider, and K. Gabriel: Distinctive acceptor-end structure and other determinants of Escherichia coli tRNA^Pro identity
Nucl. Acids Res. 1994 22: 522-529; doi:10.1093/nar/22.3.522 [Abstract] [Print PDF] [Request Permissions]

CHEMISTRY:

C. Rodolfo, A. Lanza, S. Tornaletti, G. Fronza, and A.M. Pedrini: The ultimate carcinogen of 4-nitroquinoline 1-oxide does not react with Z-DNA and hyperreacts with B-Z junctions
Nucl. Acids Res. 1994 22: 314-320; doi:10.1093/nar/22.3.314 [Abstract] [Print PDF] [Request Permissions]

Liang Zhou, Alan M. Morocho, Ban-chin Chen, and Jack S. Cohen: Synthesis of phosphorothioate-methylphosphonate oligonucleotide co-polymers
Nucl. Acids Res. 1994 22: 453-456; doi:10.1093/nar/22.3.453 [Abstract] [Print PDF] [Request Permissions]

Vincent Murray and Roger F. Martin: Ultraviolet light-induced cleavage of DNA in presence of iodoHoechst 33258: the sequence specificity of the reaction
Nucl. Acids Res. 1994 22: 506-513; doi:10.1093/nar/22.3.506 [Abstract] [Print PDF] [Request Permissions]

METHODS:

K. Khrapko, J.S. Hanekamp, W.G. Thilly, A. Belenkii, F. Foret, and B.L. Karger: Constant denaturant capillary electrophoresis (CDCE): a high resolution approach to mutational anaylsis
Nucl. Acids Res. 1994 22: 364-369; doi:10.1093/nar/22.3.364 [Abstract] [Print PDF] [Request Permissions]

Daniela Dimitrova, Mauro Giacca, and Arturo Falaschi: A modified protocol for in vivo footprinting by ligation-mediated polymerase chain reaction
Nucl. Acids Res. 1994 22: 532-533; doi:10.1093/nar/22.3.532 [Print PDF] [Request Permissions]

Sarah A. Mathews and Kadaba S. Sriprakash: R17 coat protein binding site: a convenient reporter for in vitro transcription
Nucl. Acids Res. 1994 22: 534-535; doi:10.1093/nar/22.3.534 [Print PDF] [Request Permissions]

Hideaki Kamata, Hitoshi Yagisawa, Sho Takahashi, and Hajime Hirata: Amphiphilic peptides enhance the efficiency of liposome-mediated DNA transfection
Nucl. Acids Res. 1994 22: 536-537; doi:10.1093/nar/22.3.536 [Print PDF] [Request Permissions]

Cedric Wesley, Michael P. Myers, and Michael Young: Rapid sequential walking from termini of cosmid, P1 and YAC inserts
Nucl. Acids Res. 1994 22: 538-539; doi:10.1093/nar/22.3.538 [Print PDF] [Request Permissions]

Marie-Pierre Rols, Christine Delteil, Guillaume Serin, and Justin Teissié: Temperature effects on electrotransfection of mammalian cells
Nucl. Acids Res. 1994 22: 540; doi:10.1093/nar/22.3.540 [Print PDF] [Request Permissions]

Domingo Barettino, Monika Feigenbutz, Rafael Valcárcel, and Hendrik G. Stunnenberg: Improved method for PCR-mediated site-directed mutagenesis
Nucl. Acids Res. 1994 22: 541-542; doi:10.1093/nar/22.3.541 [Print PDF] [Request Permissions]

Hiroyasu Nakano, Tetsuo Yamazaki, Masato Ikeda, Hisao Masai, Sho-ichiro Miyatake, and Takashi Saito: Purification of glutathione S-transferase fusion proteins as a non-degraded form by using a protease-nagative E.coli strain, AD202
Nucl. Acids Res. 1994 22: 543-544; doi:10.1093/nar/22.3.543 [Print PDF] [Request Permissions]

Edwin Lasonder, Gerard A. Schellekens, and Gjalt W. Welling: A fast and sensitive method for the evaluation of binding of phage clones selected from a surface displayed library
Nucl. Acids Res. 1994 22: 545-546; doi:10.1093/nar/22.3.545 [Print PDF] [Request Permissions]

Sandrine Rhoer-Moja, Hervé Bazin, Sylvie Sauvaigo, Camille Chypre, and Monique Vindimian: Solid support quantitation of c-myc PCR products using a cleavable reporter
Nucl. Acids Res. 1994 22: 547-548; doi:10.1093/nar/22.3.547 [Print PDF] [Request Permissions]

Corrigendum:

X. Liu and M.A. Gorovsky: Mapping the 5' and the 3' ends of Tetrahymena thermophila mRNAs using RNA ligase mediated amplification of cDNA ends (RLM-RACE)
Nucl. Acids Res. 1994 22: 551; doi:10.1093/nar/22.3.551 [Abstract] [Print PDF] [Request Permissions]

Errata:

M.J. Sadofsky, J.E. Hesse, J.F. McBlane, and M. Gellert: Expression and V(D)J recombination activity of mutated RAG-1 proteins
Nucl. Acids Res. 1994 22: 550; doi:10.1093/nar/22.3.550 [Abstract] [Print PDF] [Request Permissions]

X.-Q. Wu and H.J. Gross: The long extra arms of human tRNA^(Ser)Sec and tRNA^Ser function as major indentity elements for serylation in an orientation-dependent, but not sequence-specific manner
Nucl. Acids Res. 1994 22: 550; doi:10.1093/nar/22.3.550-a [Abstract] [Print PDF] [Request Permissions]

Author index:

: Author index
Nucl. Acids Res. 1994 22: 549; doi:10.1093/nar/22.3.549 [Print PDF] [Request Permissions]

SHORT REPORTS:

Teresa M. Wilson, James P. Carney, and Mark R. Kelley: Cloning of the multifunctional rat apurinic/apyrimidinic endonuclease (rAPEN)/redox factor from an immature T cell line
Nucl. Acids Res. 1994 22: 530-531; doi:10.1093/nar/22.3.530 [Print PDF] [Request Permissions]

STRUCTURAL BIOLOGY:

Iris Meier and Wilhelm Gruissem: Novel conserved sequence motifs in plant G-box binding proteins and implications for interactive domains
Nucl. Acids Res. 1994 22: 470-478; doi:10.1093/nar/22.3.470 [Abstract] [Print PDF] [Request Permissions]

Ralf M. Zimmermann and Edward C. Cox: DNA stretching on functionalized gold surfaces
Nucl. Acids Res. 1994 22: 492-497; doi:10.1093/nar/22.3.492 [Abstract] [Print PDF] [Request Permissions]

Nucleic Acids Research