Nucleic Acids Research

COMPUTATIONAL BIOLOGY:

Jian Han, Chuancheih Hsu, Zhou Zhu, John W. Longshore, and Wayne H. Finley

Over-representation of the disease associated (CAG) and (CGG) repeats in the human genome
Nucl. Acids Res. 1994 22: 1735-1740; doi:10.1093/nar/22.9.1735 [Abstract] [Print PDF] [Request Permissions]  

SURVEY AND SUMMARY:

Stefan Stamm, Mike Q. Zhang, Thomas G. Marr, and David M. Helfman

A sequence compilation and comparison of exons that are alternatively spliced in neurons
Nucl. Acids Res. 1994 22: 1515-1526; doi:10.1093/nar/22.9.1515 [Abstract] [Print PDF] [Request Permissions]  

MOLECULAR BIOLOGY:

Vladimir Noskov, Satoko Maki, Yasuo Kawasaki, Sun-Hee Leem, Bun-Ichiro Ono, Hiroyuki Araki, Youri Pavlov, and Akio Sugino

The RFC2 gene encoding a subunit of replication factor C of Saccharomyces cerevisiae
Nucl. Acids Res. 1994 22: 1527-1535; doi:10.1093/nar/22.9.1527 [Abstract] [Print PDF] [Request Permissions]  

John A. Chaddock, J.Michael Lord, Martin R. Hartley, and Lynne M. Roberts

Pokeweed antiviral protein (PAP) mutations which permit E.coli growth do not eliminate catalytic activity towards prokaryotic ribosomes
Nucl. Acids Res. 1994 22: 1536-1540; doi:10.1093/nar/22.9.1536 [Abstract] [Print PDF] [Request Permissions]  

Sandra Da Re, Stéphane Bertagnoli, Joëlle Fourment, Jean-Marc Reyrat, and Daniel Kahn

Intramolecular signal transduction within the FixJ transcriptional activator: in vitro evidence for the inhibitory effect of the phosphorylatable regulatory domain
Nucl. Acids Res. 1994 22: 1555-1561; doi:10.1093/nar/22.9.1555 [Abstract] [Print PDF] [Request Permissions]  

George Orphanides and Anthony Maxwell

Evidence for a conformational change in the DNA gyrase–DNA complex from hydroxyl radical footprinting
Nucl. Acids Res. 1994 22: 1567-1575; doi:10.1093/nar/22.9.1567 [Abstract] [Print PDF] [Request Permissions]  

Kerstin B. Meyer and John Ireland

Activation of the immunoglobulin 3' enhancer in pre-B cells correlates with the suppression of a nuclear factor binding to a sequence flanking the active core
Nucl. Acids Res. 1994 22: 1576-1582; doi:10.1093/nar/22.9.1576 [Abstract] [Print PDF] [Request Permissions]  

Ghislaine Schweizer-Groyer, André Groyer, Françoise Cadepond, Thierry Grange, Etienne-Emile Baulieu, and Raymond Pictet

Expression from the tyrosine aminotransferase promoter (nt –350 to +1) is liver-specific and dependent on the binding of both liver-enriched and ubiquitous trans-acting factors
Nucl. Acids Res. 1994 22: 1583-1592; doi:10.1093/nar/22.9.1583 [Abstract] [Print PDF] [Request Permissions]  

Valérie Lefrère and Roger F. Duncan

Heat shock-induced repression of proteolysis: poly(A)-binding protein degradation patterns can illusorily suggest its specific loss during heat shock
Nucl. Acids Res. 1994 22: 1640-1642; doi:10.1093/nar/22.9.1640 [Abstract] [Print PDF] [Request Permissions]  

Nicole Beyert, Susanne Reichenberger, Michael Peters, Markus Hartung, Bernd Göttlich, Wolfgang Goedecke, Walter Vielmetter, and Petra Pfeiffer

Nonhomologous DNA end joining of synthetic hairpin substrates in Xenopus laevis egg extracts
Nucl. Acids Res. 1994 22: 1643-1650; doi:10.1093/nar/22.9.1643 [Abstract] [Print PDF] [Request Permissions]  

Stefan Zwilling, Arnd Annweiler, and Thomas Wirth

The POU domains of the Oct1 and Oct2 transcription factors mediate specific interaction with TBP
Nucl. Acids Res. 1994 22: 1655-1662; doi:10.1093/nar/22.9.1655 [Abstract] [Print PDF] [Request Permissions]  

A. Klungland, M. Bjørås, E. Hoff, and E. Seeberg

Increased removal of 3-alkyladenine reduces the frequencies of hprt mutations induced by methyl- and ethylmethanesulfonate in Chinese hamster fibroblast cells
Nucl. Acids Res. 1994 22: 1670-1674; doi:10.1093/nar/22.9.1670 [Abstract] [Print PDF] [Request Permissions]  

Gauko A. Kuiken, Peter J.A. Bertens, Josi Peterson-Maduro, Gert Jan C. Veenstra, Johanna G. Koster, and Olivier H.J. Destrée

The promoter of the Xwnt-5C gene contains octamer and AP-2 motifs functional in Xenopus embryos
Nucl. Acids Res. 1994 22: 1675-1680; doi:10.1093/nar/22.9.1675 [Abstract] [Print PDF] [Request Permissions]  

Richard W. Robertson, Leying Zhang, David S. Pasco, and John B. Fagan

Aryl hydrocarbon-induced interactions at multiple DNA elements of diverse sequence—a multicomponent mechanism for activation of cytochrome P4501A1 (CYP1A1) gene transcription
Nucl. Acids Res. 1994 22: 1741-1749; doi:10.1093/nar/22.9.1741 [Abstract] [Print PDF] [Request Permissions]  

RNA:

Soo-Chen Cheng

Formation of the yeast splicing complex A1 and association of the splicing factor PRP19 with the pre-mRNA are independent of the 3' region of the intron
Nucl. Acids Res. 1994 22: 1548-1554; doi:10.1093/nar/22.9.1548 [Abstract] [Print PDF] [Request Permissions]  

Richard A.J. Hodgson, Neil J. Shirley, and Robert H. Symons

Probing the hammerhead ribozyme structure with ribonucleases
Nucl. Acids Res. 1994 22: 1620-1625; doi:10.1093/nar/22.9.1620 [Abstract] [Print PDF] [Request Permissions]  

Anil Ghosh, Trina Ghosh, Subhagata Ghosh, Saumitra Das, and Samit Adhya

Interaction of small ribosomal and transfer RNAs with a protein from Leishmania donovani
Nucl. Acids Res. 1994 22: 1663-1669; doi:10.1093/nar/22.9.1663 [Abstract] [Print PDF] [Request Permissions]  

Herren Wu, Lihong Jiang, and Robert A. Zimmermann

The binding site for ribosomal protein S8 in 16S rRNA and spc mRNA from Escherichia coli: minimum structural requirements and the effects of single bulged bases on S8 — RNA interaction
Nucl. Acids Res. 1994 22: 1687-1695; doi:10.1093/nar/22.9.1687 [Abstract] [Print PDF] [Request Permissions]  

Hsiao-Hsueh Shu and Kenneth Stuart

Mitochondrial transcripts are processed but are not edited normally in Trypanosoma equiperdum (ATCC 30019) which has kDNA sequence deletion and duplication
Nucl. Acids Res. 1994 22: 1696-1700; doi:10.1093/nar/22.9.1696 [Abstract] [Print PDF] [Request Permissions]  

Ben Berkhout and Formijn J.van Hemert

The unusual nucleotide content of the HIV RNA genome results in a biased amino acid composition of HIV proteins
Nucl. Acids Res. 1994 22: 1705-1711; doi:10.1093/nar/22.9.1705 [Abstract] [Print PDF] [Request Permissions]  

F. Manna, D.R. Massardo, K. Wolf, G. Luccarini, M.S. Carlomagno, F. Rivellini, P. Alifano, and L.Del Giudice

A tRNA gene mapping within the chloroplast rDNA cluster is differentially expressed during the development of Daucus carota
Nucl. Acids Res. 1994 22: 1712-1718; doi:10.1093/nar/22.9.1712 [Abstract] [Print PDF] [Request Permissions]  

J. Hu, Y. Xu, K. Schappert, T. Harrington, A. Wang, R. Braga, J. Mogridge, and J.D. Friesen

Mutational analysis of the PRP4 protein of Saccharomyces cerevisiae suggests domain structure and snRNP interactions
Nucl. Acids Res. 1994 22: 1724-1734; doi:10.1093/nar/22.9.1724 [Abstract] [Print PDF] [Request Permissions]  

METHODS:

Takanori Oka, Hironari Matsunaga, Katsushi Tokunaga, Shigeki Mitsunaga, Takeo Juji, and Akio Yamane

A simple method for detecting single base substitutions and its application to HLA-DPB1 typing
Nucl. Acids Res. 1994 22: 1541-1547; doi:10.1093/nar/22.9.1541 [Abstract] [Print PDF] [Request Permissions]  

Deena M. Kegler-Ebo, Catherine M. Docktor, and Daniel DiMaio

Codon cassette mutagenesis: a general method to insert or replace individual codons by using universal mutagenic cassettes
Nucl. Acids Res. 1994 22: 1593-1599; doi:10.1093/nar/22.9.1593 [Abstract] [Print PDF] [Request Permissions]  

Sanjay K. Shukla and David McCarthy

An activity gel assay for the detection of DNA helicases and nucleases from cell-free extracts
Nucl. Acids Res. 1994 22: 1626-1631; doi:10.1093/nar/22.9.1626 [Abstract] [Print PDF] [Request Permissions]  

Manfred S. Wehnert, Robert S. Matson, Jang B. Rampal, Peter J. Coassin, and C.Thomas Caskey

A rapid scanning strip for tri- and dinucleotide short tandem repeats
Nucl. Acids Res. 1994 22: 1701-1704; doi:10.1093/nar/22.9.1701 [Abstract] [Print PDF] [Request Permissions]  

Eckhard Birch-Hirschfeld, Zeno Földes-Papp, Karl-Heinz Gührs, and Hartmut Seliger

A versatile support for the synthesis of oligonucleotides of extended length and scale
Nucl. Acids Res. 1994 22: 1760-1761; doi:10.1093/nar/22.9.1760 [Print PDF] [Request Permissions]  

Michael Granato, Heinke Schnabel, and Ralf Schnabel

pha-1, a selectable marker for gene transfer in C.elegans
Nucl. Acids Res. 1994 22: 1762-1763; doi:10.1093/nar/22.9.1762 [Print PDF] [Request Permissions]  

Fengsheng Li, Elliot S. Barnathan, and Katalin Karikó

Rapid method for screening and cloning cDNAs generated in differential mRNA display: application of Northern blot for affinity capturing of cDNAs
Nucl. Acids Res. 1994 22: 1764-1765; doi:10.1093/nar/22.9.1764 [Print PDF] [Request Permissions]  

Barbara C. Byth, Gordon R. Thomas, Nandy Hofland, and Diane W. Cox

Application of inverse PCR to isolation of end probes from cosmids
Nucl. Acids Res. 1994 22: 1766-1767; doi:10.1093/nar/22.9.1766 [Print PDF] [Request Permissions]  

Marica Sassano, Monica Repetto, Giovanni Cassani, and Angelo Corti

PCR amplification of antibody variable regions using primers that anneal to constant regions
Nucl. Acids Res. 1994 22: 1768-1769; doi:10.1093/nar/22.9.1768 [Print PDF] [Request Permissions]  

Michael McClelland, Hartwig Arensdorf, Rita Cheng, and John Welsh

Arbitrarily primed PCR fingerprints resolved on SSCP gels
Nucl. Acids Res. 1994 22: 1770-1771; doi:10.1093/nar/22.9.1770 [Print PDF] [Request Permissions]  

Francois Guidet

A powerful new technique to quickly prepare hundreds of plant extracts for PCR and RAPD analyses
Nucl. Acids Res. 1994 22: 1772-1773; doi:10.1093/nar/22.9.1772 [Print PDF] [Request Permissions]  

Lu Wang, Kazunari Hirayasu, Masaki Ishizawa, and Yoshiteru Kobayashi

Purification of genomic DNA from human whole blood by isopropanol-fractionation with concentrated Nal and SDS
Nucl. Acids Res. 1994 22: 1774-1775; doi:10.1093/nar/22.9.1774 [Print PDF] [Request Permissions]  

Peter H. Denton, John B. Cullen, Deborah Loeb, Ann Lucas, Kenneth Nunes, Christine Hulett, and Jeffery M. Vance

Partitioned pulsed-field gel electrophoresis-PCR (PPF-PCR): a new method for pulsed-field mapping for STS and microsatellites
Nucl. Acids Res. 1994 22: 1776-1777; doi:10.1093/nar/22.9.1776 [Print PDF] [Request Permissions]  

Christian Bendixen, Serge Gangloff, and Rodney Rothstein

A yeast mating-selection scheme for detection of protein – protein interactions
Nucl. Acids Res. 1994 22: 1778-1779; doi:10.1093/nar/22.9.1778 [Print PDF] [Request Permissions]  

Greg A. Penner and Leslie J. Bezte

Increased detection of polymorphism among randomly amplified wheat DNA fragments using a modified temperature sweep gel electrophoresis (TSGE) technique
Nucl. Acids Res. 1994 22: 1780-1781; doi:10.1093/nar/22.9.1780 [Print PDF] [Request Permissions]  

Author index:

Author index
Nucl. Acids Res. 1994 22: 1783; doi:10.1093/nar/22.9.1783 [Print PDF] [Request Permissions]  

ENZYMOLOGY:

Lie-Kuo Liem, Allan Lim, and Benjamin F.L. Li

Specificities of human, rat and E.coli O⁶-methylguanine-DNA methyltransferases towards the repair of O⁶-methyl and O⁶-ethylguanine in DNA
Nucl. Acids Res. 1994 22: 1613-1619; doi:10.1093/nar/22.9.1613 [Abstract] [Print PDF] [Request Permissions]  

GENOME STRUCTURE AND MAPPING:

Michael A. Ayliffe, Greg J. Lawrence, Jeff G. Ellis, and Anthony J. Pryor

Heteroduplex molecules formed between allelic sequences cause nonparental RAPD bands
Nucl. Acids Res. 1994 22: 1632-1636; doi:10.1093/nar/22.9.1632 [Abstract] [Print PDF] [Request Permissions]  

Nobuyuki Fujita, Hirotada Mori, Takashi Yura, and Akira Ishihama

Systematic sequencing of the Escherichia coli genome: analysis of the 2.4–4.1 min (110,917–193,643 bp) region
Nucl. Acids Res. 1994 22: 1637-1639; doi:10.1093/nar/22.9.1637 [Abstract] [Print PDF] [Request Permissions]  

Morimasa Wada, Kuniya Abe, Katsuzumi Okumura, Hiroshi Taguchi, Kimitoshi Kohno, Fumio Imamoto, David Schlessinger, and Michihiko Kuwano

Chimeric YACs were generated at unreduced rates in conditions that suppress coligation
Nucl. Acids Res. 1994 22: 1651-1654; doi:10.1093/nar/22.9.1651 [Abstract] [Print PDF] [Request Permissions]  

Margaret M. Sedensky, Susan J. Hudson, Barbara Everson, and Phil G. Morgan

Identification of a mariner-like repetitive sequence in C.elegans
Nucl. Acids Res. 1994 22: 1719-1723; doi:10.1093/nar/22.9.1719 [Abstract] [Print PDF] [Request Permissions]  

M.Q. Zhang and T.G. Marr

Fission yeast gene structure and recognition
Nucl. Acids Res. 1994 22: 1750-1759; doi:10.1093/nar/22.9.1750 [Abstract] [Print PDF] [Request Permissions]  

STRUCTURAL BIOLOGY:

Markus Biburger, Michael Niederweis, and Wolfgang Hillen

Oligo[d(C) · (G)] runs exhibit a helical repeat of 11.1 bp in solution and cause slight DNA curvature when properly phased
Nucl. Acids Res. 1994 22: 1562-1566; doi:10.1093/nar/22.9.1562 [Abstract] [Print PDF] [Request Permissions]  

Jean-Louis Leroy, Maurice Guéron, Jean-Louis Mergny, and Claude Hélène

Intramolecular folding of a fragment of the cytosine-rich strand of telomeric DNA into an i-motif
Nucl. Acids Res. 1994 22: 1600-1606; doi:10.1093/nar/22.9.1600 [Abstract] [Print PDF] [Request Permissions]  

N. Spink, D.G. Brown, J.V. Skelly, and S. Neidle

Sequence-dependent effects in drug-DNA interaction: the crystal structure of Hoechst 33258 bound to the d(CGCAAATTTGCG)₂ duplex
Nucl. Acids Res. 1994 22: 1607-1612; doi:10.1093/nar/22.9.1607 [Abstract] [Print PDF] [Request Permissions]  

Evelyne Marguet and Patrick Forterre

DNA stability at temperatures typical for hyperthermophiles
Nucl. Acids Res. 1994 22: 1681-1686; doi:10.1093/nar/22.9.1681 [Abstract] [Print PDF] [Request Permissions]  

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