Nucleic Acids Research

COMPUTATIONAL BIOLOGY:

David A. Nielsen, Alexey Novoradovsky, and David Goldman

SSCP primer design based on single-strand DNA structure predicted by a DNA folding program
Nucl. Acids Res. 1995 23: 2287-2291; doi:10.1093/nar/23.12.2287 [Abstract] [Print PDF] [Request Permissions]  

SURVEY AND SUMMARY:

Masashi Suzuki and Naoto Yagi

Stereochemical basis of DNA bending by transcription factors
Nucl. Acids Res. 1995 23: 2083-2091; doi:10.1093/nar/23.12.2083 [Abstract] [Print PDF] [Request Permissions]  

MOLECULAR BIOLOGY:

Hiroshi Kimura, Nanako Takizawa, Nobuo Nozaki, and Kazunori Sugimoto

Molecular cloning of cDNA encoding mouse Cdc21 and CDC46 homologs and characterization of the products: physical interaction between P1 (MCM3) and CDC46 proteins
Nucl. Acids Res. 1995 23: 2097-2104; doi:10.1093/nar/23.12.2097 [Abstract] [Print PDF] [Request Permissions]  

Andrew W. Dangel, Liming Shen, Anna R. Mendoza, Lai-chu Wu, and C.Yung Yu

Human helicase gene SKI2W in the HLA class III region exhibits striking structural similarities to the yeast antiviral gene SKI2 and to the human gene KIAA0052: emergence of a new gene family
Nucl. Acids Res. 1995 23: 2120-2126; doi:10.1093/nar/23.12.2120 [Abstract] [Print PDF] [Request Permissions]  

Toshifumi Matsuyama, Alex Grossman, Hans-Willi Mittrücker, David P. Siderovski, Friedemann Kiefer, Takatoshi Kawakami, Christopher D. Richardson, Tadatsugu Taniguchi, Steven K. Yoshinaga, and Tak W. Mak

Molecular cloning of LSIRF, a lymphoid-specific member of the interferon regulatory factor family that binds the interferon-stimulated response element (ISRE)
Nucl. Acids Res. 1995 23: 2127-2136; doi:10.1093/nar/23.12.2127 [Abstract] [Print PDF] [Request Permissions]  

Caroline E. Grant, Monika Z. Vasa, and Roger G. Deeley

clRF-3, a new member of the interferon regulatory factor (IRF) family that is rapidly and transiently induced by dsRNA
Nucl. Acids Res. 1995 23: 2137-2146; doi:10.1093/nar/23.12.2137 [Abstract] [Print PDF] [Request Permissions]  

Leland H. Johnston and Anthony L. Johnson

The DNA repair genes RAD54 and UNG1 are cell cycle regulated in budding yeast but MCB promoter elements have no essential role in the DNA damage response
Nucl. Acids Res. 1995 23: 2147-2152; doi:10.1093/nar/23.12.2147 [Abstract] [Print PDF] [Request Permissions]  

Katharina Montag, Francesco Salamini, and Richard D. Thompson

ZEMa, a member of a novel group of MADS box genes, is alternatively spliced in maize endosperm
Nucl. Acids Res. 1995 23: 2168-2177; doi:10.1093/nar/23.12.2168 [Abstract] [Print PDF] [Request Permissions]  

Jussi Tuusa, Lahja Uitto, and Juhani E. Syvaoja

Human DNA polymerase is expressed during cell proliferation in a manner characteristic of replicative DNA polymerases
Nucl. Acids Res. 1995 23: 2178-2183; doi:10.1093/nar/23.12.2178 [Abstract] [Print PDF] [Request Permissions]  

Lorelei Westin, Patrik Blomquist, John F. Milligan, and Örjan Wrange

Triple helix DNA alters nucleosomal histone-DNA interactions and acts as a nucleosome barrier
Nucl. Acids Res. 1995 23: 2184-2191; doi:10.1093/nar/23.12.2184 [Abstract] [Print PDF] [Request Permissions]  

Osvaldo P. de Melo Neto, Nancy Standart, and Cezar Martins de Sa

Autoregulation of poly(A)-binding protein synthesis in vitro
Nucl. Acids Res. 1995 23: 2198-2205; doi:10.1093/nar/23.12.2198 [Abstract] [Print PDF] [Request Permissions]  

Bassel E. Sawaya and Evelyne Schaeffer

Transcription of the human transferrin gene in neuronal cells
Nucl. Acids Res. 1995 23: 2206-2211; doi:10.1093/nar/23.12.2206 [Abstract] [Print PDF] [Request Permissions]  

Peter W. Hoffman and Jeffrey M. Chernak

DNA binding and regulatory effects of transcription factors SP1 and USF at the rat amyloid precursor protein gene promoter
Nucl. Acids Res. 1995 23: 2229-2235; doi:10.1093/nar/23.12.2229 [Abstract] [Print PDF] [Request Permissions]  

Akira Aizawa, Tadashi Yoneyama, Koji Kazahari, and Masao Ono

DNase l-hypersensitive sites in the chromatin of rat growth hormone gene locus and enhancer activity of regions with these sites
Nucl. Acids Res. 1995 23: 2236-2244; doi:10.1093/nar/23.12.2236 [Abstract] [Print PDF] [Request Permissions]  

Joomyeong Kim, David H. Kass, and Prescott L. Deininger

Transcription and processing of the rodent ID repeat family in germline and somatic cells
Nucl. Acids Res. 1995 23: 2245-2251; doi:10.1093/nar/23.12.2245 [Abstract] [Print PDF] [Request Permissions]  

Paul Labhart

The Xenopus 9 bp ribosomal terminator (T3 box) is a pause signal for the RNA polymerase I elongation complex
Nucl. Acids Res. 1995 23: 2252-2258; doi:10.1093/nar/23.12.2252 [Abstract] [Print PDF] [Request Permissions]  

Loretta Arcangeli and Kandace J. Williams

Mammalian assay for site-specific DNA damage processing using the human H-ras proto-oncogene
Nucl. Acids Res. 1995 23: 2269-2276; doi:10.1093/nar/23.12.2269 [Abstract] [Print PDF] [Request Permissions]  

Freddy Radtke, Oleg Georgiev, Hans-Peter Müller, Enrico Brugnera, and Walter Schaffner

Functional domains of the heavy metal-responsive transcription regulator MTF-1
Nucl. Acids Res. 1995 23: 2277-2286; doi:10.1093/nar/23.12.2277 [Abstract] [Print PDF] [Request Permissions]  

Giovanni Widmer and Sheryl Dooley

Phylogenetic analysis of Leishmania RNA virus and Leishmania suggests ancient virus-parasite association
Nucl. Acids Res. 1995 23: 2300-2304; doi:10.1093/nar/23.12.2300 [Abstract] [Print PDF] [Request Permissions]  

Craig Rhodes and Yoshihiko Yamada

Characterization of a glucocorticoid responsive element and identification of an AT-rich element that regulate the link protein gene
Nucl. Acids Res. 1995 23: 2305-2313; doi:10.1093/nar/23.12.2305 [Abstract] [Print PDF] [Request Permissions]  

Luigia Lombardi, Paolo Ciana, Catarlna Cappellini, Dino Trecca, Luisa Guerrini, Anna Migliazza, Anna Teresa Maiolo, and Antonino Neri

Structural and functional characterization of the promoter regions of the NFKB2 gene
Nucl. Acids Res. 1995 23: 2328-2336; doi:10.1093/nar/23.12.2328 [Abstract] [Print PDF] [Request Permissions]  

RNA:

Martina Werner and Olke C. Uhlenbeck

The effect of base mismatches in the substrate recognition helices of hammerhead ribozymes on binding and catalysis
Nucl. Acids Res. 1995 23: 2092-2096; doi:10.1093/nar/23.12.2092 [Abstract] [Print PDF] [Request Permissions]  

Naoki ato

A family of cold-regulated RNA-binding protein genes in the cyanobacterium Anabaena variabilis M3
Nucl. Acids Res. 1995 23: 2161-2167; doi:10.1093/nar/23.12.2161 [Abstract] [Print PDF] [Request Permissions]  

Olaf Heidenreich, Shin-Heh Kang, David A. Brown, Xiao Xu, Piotr Swiderski, John J. Rossi, Fritz Eckstein, and Michael Nerenberg

Ribozyme-mediated RNA degradation in nuclei suspension
Nucl. Acids Res. 1995 23: 2223-2228; doi:10.1093/nar/23.12.2223 [Abstract] [Print PDF] [Request Permissions]  

James D. Thompson, David F. Ayers, Terra A. Malmstrom, Timothy L. McKenzie, Louis Ganousis, Bharat M. Chowrira, Larry Couture, and Dan T. Stinchcomb

Improved accumulation and activity of ribozymes expressed from a tRNA-based RNA polymerase III promoter
Nucl. Acids Res. 1995 23: 2259-2268; doi:10.1093/nar/23.12.2259 [Abstract] [Print PDF] [Request Permissions]  

CHEMISTRY:

Rong Xu, Bing Mao, Jing Xu, Bin Li, Sheryl Birke, Charles E. Swenberg, and Nicholas E. Geacintov

Stereochemistry-dependent bending in oligonucleotide duplexes induced by site-specific covalent benzo[a]pyrene diol epoxide-guanine lesions
Nucl. Acids Res. 1995 23: 2314-2319; doi:10.1093/nar/23.12.2314 [Abstract] [Print PDF] [Request Permissions]  

METHODS:

Joseph A. Gerstner, Paula Pedroso, Joseph Morris, and B. John Bergot

Gram-scale purification of phosphorothioate oligonucleotides using ion-exchange displacement chromatography
Nucl. Acids Res. 1995 23: 2292-2299; doi:10.1093/nar/23.12.2292 [Abstract] [Print PDF] [Request Permissions]  

Brian J. McKeown and Romelle Piercy

Increasing the size of PCR products without redesigning primer binding sequences
Nucl. Acids Res. 1995 23: 2337-2338; doi:10.1093/nar/23.12.2337 [Print PDF] [Request Permissions]  

Robert D. Miller and Roy Riblet

Improved phenol emulsion DNA reassociation technique (PERT) using thermal cycling
Nucl. Acids Res. 1995 23: 2339-2340; doi:10.1093/nar/23.12.2339 [Print PDF] [Request Permissions]  

Claire Simard and Isabelle Langlois

Chasing dideoxy-mediated sequencing reactions with terminal deoxynucleotidyl transferase may result in nucleotide inversions in sequencing gels
Nucl. Acids Res. 1995 23: 2341; doi:10.1093/nar/23.12.2341 [Print PDF] [Request Permissions]  

Wolfgang Mikulits, Doris Chen, and Ernst W. Müllner

Dexamethasone inducible gene expression optimised by glucocorticoid antagonists
Nucl. Acids Res. 1995 23: 2342-2343; doi:10.1093/nar/23.12.2342 [Print PDF] [Request Permissions]  

Shin-Heh Kang, Xiao Xu, Olaf Heidenreich, Sergei Gryaznov, and Michael Nerenberg

A new affinity purification procedure for DNA-binding proteins using bromoacetyl agarose
Nucl. Acids Res. 1995 23: 2344-2345; doi:10.1093/nar/23.12.2344 [Print PDF] [Request Permissions]  

Karen M. Vossen and Michael G. Fried

Stability of lac repressor-operator complexes in a new agarose-based gel matrix
Nucl. Acids Res. 1995 23: 2346-2347; doi:10.1093/nar/23.12.2346 [Print PDF] [Request Permissions]  

Michael K. Trower, Doreen Burt, Ian J. Purvis, Colin W. Dykes, and Chri Christodoulou

Fluorescent dye-primer cycle sequencing using unpurified PCR products as templates; development of a protocol amenable to high-throughput DNA sequencing
Nucl. Acids Res. 1995 23: 2348-2349; doi:10.1093/nar/23.12.2348 [Print PDF] [Request Permissions]  

Author index:

Author index
Nucl. Acids Res. 1995 23: 2349; doi:10.1093/nar/23.12.2349 [Print PDF] [Request Permissions]  

ENZYMOLOGY:

O. V. Petrauskene, S. Schmidt, A. S. Karyagina, I.I. Nikolskaya, E. S. Gromova, and D. Cech

The interaction of DNA duplexes containing 2-aminopurine with restriction endonucleases EcoRll and Ssoll
Nucl. Acids Res. 1995 23: 2192-2197; doi:10.1093/nar/23.12.2192 [Abstract] [Print PDF] [Request Permissions]  

GENOME STRUCTURE AND MAPPING:

Valerie Burland, Guy Plunkett, III, Heidi J. Sofia, Donna L. Daniels, and Frederick R. Blattner

Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes
Nucl. Acids Res. 1995 23: 2105-2119; doi:10.1093/nar/23.12.2105 [Abstract] [Print PDF] [Request Permissions]  

STRUCTURAL BIOLOGY:

Robert J. Cain, Erik R. P. Zuiderweg, and Gary D. Glick

Solution structure of a DNA hairpin and its disulfide cross-linked analog
Nucl. Acids Res. 1995 23: 2153-2160; doi:10.1093/nar/23.12.2153 [Abstract] [Print PDF] [Request Permissions]  

Julie L. Kadrmas, Amy J. Ravin, and Neocles B. Leontis

Relative stabilities of DNA three-way, four-way and five-way junctions (multi-helix junction loops): unpaired nucleotides can be stabilizing or destabilizing
Nucl. Acids Res. 1995 23: 2212-2222; doi:10.1093/nar/23.12.2212 [Abstract] [Print PDF] [Request Permissions]  

Marco Musso and Michael W. Van Dyke

Polyamine effects on purine-purine-pyrimidine triple helix formation by phosphodiester and phosphorothioate oligodeoxyribonucleotides
Nucl. Acids Res. 1995 23: 2320-2327; doi:10.1093/nar/23.12.2320 [Abstract] [Print PDF] [Request Permissions]  

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