Nucleic Acids Research

COMPUTATIONAL BIOLOGY:

Mark Borodovsky, James D. Mclninch, Eugene V. Koonin, Kenneth E. Rudd, Claudine Médigue, and Antoine Danchin

Detection of new genes in a bacterial genome using Markov models for three gene classes
Nucl. Acids Res. 1995 23: 3554-3562; doi:10.1093/nar/23.17.3554 [Abstract] [Print PDF] [Request Permissions]  

SURVEY AND SUMMARY:

David M. J. Lilley, Robert M. Clegg, Stephan Diekmann, Nadrian C. Seeman, Eberhard von Kitzing, and Paul J. Hagerman

A nomenclature of junctions and branchpoints in nucleic acids
Nucl. Acids Res. 1995 23: 3363-3364; doi:10.1093/nar/23.17.3363 [Print PDF] [Request Permissions]  

MOLECULAR BIOLOGY:

Frances Connor, Edwina Wright, Paul Denny, Peter Koopman, and Alan Ashworth

The Sry-related HMG box-containing gene Sox6 is expressed in the adult testis and developing nervous system of the mouse
Nucl. Acids Res. 1995 23: 3365-3372; doi:10.1093/nar/23.17.3365 [Abstract] [Print PDF] [Request Permissions]  

Dieter A. Wolf, Lothar J. Strobl, Andrea Pullner, and Dirk Eick

Variable pause positions of RNA polymerase II lie proximal to the c-myc promoter irrespective of transcriptional activity
Nucl. Acids Res. 1995 23: 3373-3379; doi:10.1093/nar/23.17.3373 [Abstract] [Print PDF] [Request Permissions]  

James R. Matthews, John Nicholson, Ellis Jaffray, Sharon M. Kelly, Nicholas C. Price, and Ronald T. Hay

Conformational changes induced by DNA binding of NF-B
Nucl. Acids Res. 1995 23: 3393-3402; doi:10.1093/nar/23.17.3393 [Abstract] [Print PDF] [Request Permissions]  

Shuichi Yanagisawa

A novel DNA-binding domain that may form a single zinc finger motif
Nucl. Acids Res. 1995 23: 3403-3410; doi:10.1093/nar/23.17.3403 [Abstract] [Print PDF] [Request Permissions]  

Isabelle Duroux, Gérard Godard, Marc Boidot-Forget, Gisela Schwab, Claude Hélène, and Tula Saison-Behmoaras

Rational design of point mutation-selective antisense DNA targeted to codon 12 of Ha-ras mRNA in human cells
Nucl. Acids Res. 1995 23: 3411-3418; doi:10.1093/nar/23.17.3411 [Abstract] [Print PDF] [Request Permissions]  

Kazuyuki Hoshijima, Ayako Kohyama, Ikuko Watakabe, Kunio Inoue, Hiroshi Sakamoto, and Yoshiro Shimura

Transcriptional regulation of the Sex-lethal gene by helix-loop-helix proteins
Nucl. Acids Res. 1995 23: 3441-3448; doi:10.1093/nar/23.17.3441 [Abstract] [Print PDF] [Request Permissions]  

Susanne Prinz, Franz Klein, Herbert Auer, Dieter Schweizer, and Michael Primig

A DNA binding factor (UBF) interacts with a positive regulatory element in the promoters of genes expressed during meiosis and vegetative growth in yeast
Nucl. Acids Res. 1995 23: 3449-3456; doi:10.1093/nar/23.17.3449 [Abstract] [Print PDF] [Request Permissions]  

James P. Mueller and Michael J. Smerdon

Repair of plasmid and genomic DNA in a rad7 mutant of yeast
Nucl. Acids Res. 1995 23: 3457-3464; doi:10.1093/nar/23.17.3457 [Abstract] [Print PDF] [Request Permissions]  

Michael Antoniou, Ernie de Boer, Eugenia Spanopoulou, Ali Imam, and Frank Grosveld

TBP binding and the rate of transcription initiation from the human ß-globin gene
Nucl. Acids Res. 1995 23: 3473-3480; doi:10.1093/nar/23.17.3473 [Abstract] [Print PDF] [Request Permissions]  

Lily Lou, Clare Bergson, and William McGinnis

Deformed expression in the Drosophila central nervous system is controlled by an autoactivated intronic enhancer
Nucl. Acids Res. 1995 23: 3481-3487; doi:10.1093/nar/23.17.3481 [Abstract] [Print PDF] [Request Permissions]  

Katsunori Sugimoto, Yoshitaka Sakamoto, Osamu Takahashi, and Kunihiro Matsumoto

HYS2, an essential gene required for DNA replication in Saccharomyces cerevisiae
Nucl. Acids Res. 1995 23: 3493-3500; doi:10.1093/nar/23.17.3493 [Abstract] [Print PDF] [Request Permissions]  

Andrew Masta, Peter J. Gray, and Don R. Phillips

Nitrogen mustard inhibits transcription and translation in a cell free system
Nucl. Acids Res. 1995 23: 3508-3515; doi:10.1093/nar/23.17.3508 [Abstract] [Print PDF] [Request Permissions]  

Raif Landgraf, Chi-hong B. Chen, and David S. Sigman

R-loop stability as a function of RNA structure and size
Nucl. Acids Res. 1995 23: 3516-3523; doi:10.1093/nar/23.17.3516 [Abstract] [Print PDF] [Request Permissions]  

Ralf Landgraf, Chi-hong B. Chen, and David S. Sigman

Double stranded scission of DNA directed through sequence-specific R-loop formation
Nucl. Acids Res. 1995 23: 3524-3530; doi:10.1093/nar/23.17.3524 [Abstract] [Print PDF] [Request Permissions]  

Sheila Harroch, Yaël Gothelf, Michel Revel, and Judith Chebath

5' upstream sequences of MyD88, an IL-6 primary response gene in M1 cells: detection of functional IRF-1 and Stat factors binding sites
Nucl. Acids Res. 1995 23: 3539-3546; doi:10.1093/nar/23.17.3539 [Abstract] [Print PDF] [Request Permissions]  

Barbara E. Withers and Joan C. Dunbar

DNA determinants in sequence-specific recognition by Xmal endonuclease
Nucl. Acids Res. 1995 23: 3571-3577; doi:10.1093/nar/23.17.3571 [Abstract] [Print PDF] [Request Permissions]  

Athena Andreadis, Jennifer A. Broderick, and Kenneth S. Kosik

Relative exon affinities and suboptimal splice site signals lead to non-equivalence of two cassette exons
Nucl. Acids Res. 1995 23: 3585-3593; doi:10.1093/nar/23.17.3585 [Abstract] [Print PDF] [Request Permissions]  

T. J. Thomas, Carol A. Faaland, Michael A. Gallo, and Thresla Thomas

Suppression of c-myc oncogene expression by a polyamine-complexed triplex forming oligonucleotide in MCF-7 breast cancer cells
Nucl. Acids Res. 1995 23: 3594-3599; doi:10.1093/nar/23.17.3594 [Abstract] [Print PDF] [Request Permissions]  

Daniel K. Treiber and James R. Williamson

A simple method for preparing pools of synthetic oligonucleotides with random point deletions
Nucl. Acids Res. 1995 23: 3603-3604; doi:10.1093/nar/23.17.3603 [Print PDF] [Request Permissions]  

Udo Baron, Sabine Freundlieb, Manfred Gossen, and Hermann Bujard

Co-regulation of two gene activities by tetracycline via a bidirectional promoter
Nucl. Acids Res. 1995 23: 3605-3606; doi:10.1093/nar/23.17.3605 [Print PDF] [Request Permissions]  

Shi-Wen Jiang and Norman L. Eberhardt

A micro-scale method to isolate DNA-binding proteins suitable for quantitative comparison of expression levels from transfected cells
Nucl. Acids Res. 1995 23: 3607-3608; doi:10.1093/nar/23.17.3607 [Print PDF] [Request Permissions]  

Weihong Song and Debomoy K. Lahiri

Efficient transfection of DNA by mixing cells in suspension with calcium phosphate
Nucl. Acids Res. 1995 23: 3609-3611; doi:10.1093/nar/23.17.3609 [Print PDF] [Request Permissions]  

RNA:

Mario Mörl, Marion Dörner, and Svante Pääbo

C to U editing and modifications during the maturation of the mitochondrial tRNA^ASP in marsupials
Nucl. Acids Res. 1995 23: 3380-3384; doi:10.1093/nar/23.17.3380 [Abstract] [Print PDF] [Request Permissions]  

Pascale Sébillon, Chérif Beldjord, Jean-Claude Kaplan, Edward Brody, and Joelle Marie

A T to G mutation in the polypyrimidine tract of the second intron of the human ß-globin gene reduces in vitro splicing efficiency: evidence for an increased hnRNP C interaction
Nucl. Acids Res. 1995 23: 3419-3425; doi:10.1093/nar/23.17.3419 [Abstract] [Print PDF] [Request Permissions]  

Ming Lu and David E. Draper

On the role of rRNA tertiary structure in recognition of ribosomal protein L11 and thiostrepton
Nucl. Acids Res. 1995 23: 3426-3433; doi:10.1093/nar/23.17.3426 [Abstract] [Print PDF] [Request Permissions]  

Béatrice Larrouy, Claudine Bolziau, Brian Sproat, and Jean-Jacques Toulmé

RNase H is responsible for the non-specific inhibition of in vitro translation by 2'-O-alkyl chimeric oligonucleotides: high affinity or selectivity, a dilemma to design antisense oligomers
Nucl. Acids Res. 1995 23: 3434-3440; doi:10.1093/nar/23.17.3434 [Abstract] [Print PDF] [Request Permissions]  

Pascal Sirand-Pugnet, Patrice Durosay, Edward Brody, and Joëlle Marie

An intronic (A/U)GGG repeat enhances the splicing of an alternative intron of the chicken ß-tropomyosin pre-mRNA
Nucl. Acids Res. 1995 23: 3501-3507; doi:10.1093/nar/23.17.3501 [Abstract] [Print PDF] [Request Permissions]  

Brooke Lustig, Nina H. Lin, Stephen M. Smith, Robert L. Jernigan, and Kuan-Teh Jeang

A small modified hammerhead ribozyme and its conformational characteristics determined by mutagenesis and lattice calculation
Nucl. Acids Res. 1995 23: 3531-3538; doi:10.1093/nar/23.17.3531 [Abstract] [Print PDF] [Request Permissions]  

Donald I. Van Ryk and Albert E. Dahlberg

Structural changes in the 530 loop of Escherichia coli 16S rRNA in mutants with impaired translational fidelity
Nucl. Acids Res. 1995 23: 3563-3570; doi:10.1093/nar/23.17.3563 [Abstract] [Print PDF] [Request Permissions]  

CHEMISTRY:

Anita Abu-Daya, Philip M. Brown, and Keith R. Fox

DNA sequence preferences of several AT-selective minor groove binding ligands
Nucl. Acids Res. 1995 23: 3385-3392; doi:10.1093/nar/23.17.3385 [Abstract] [Print PDF] [Request Permissions]  

Rainer Berressem and Joachim W. Engels

6-Oxocytidine a novel protonated C-base analogue for stable triple helix formation
Nucl. Acids Res. 1995 23: 3465-3472; doi:10.1093/nar/23.17.3465 [Abstract] [Print PDF] [Request Permissions]  

Ethel Rubin, Squire Rumney, IV, Shaohui Wang, and Eric T. Kool

Convergent DNA synthesis: a non-enzymatic dimerization approach to circular oligodeoxynucleotides
Nucl. Acids Res. 1995 23: 3547-3553; doi:10.1093/nar/23.17.3547 [Abstract] [Print PDF] [Request Permissions]  

Ekambar R. Kandimalla, Adrienne Manning, Christopher Lathan, Randal A. Byrn, and Sudhir Agrawal

Design, biochemical, biophysical and biological properties of cooperative antisense oligonucleotides
Nucl. Acids Res. 1995 23: 3578-3584; doi:10.1093/nar/23.17.3578 [Abstract] [Print PDF] [Request Permissions]  

METHODS:

Michael T. Barrett, Brian J. Reid, and Geoffrey Joslyn

Genotypic analysis of multiple loci in somatic cells by whole genome amplification
Nucl. Acids Res. 1995 23: 3488-3492; doi:10.1093/nar/23.17.3488 [Abstract] [Print PDF] [Request Permissions]  

Morteza M. Vaghefi, Robert C. Fazio, Kevin M. Young, and William B. Marvin

Synthesis of ³H-labeled nucleoside-methyl[CT³]phosphonate and incorporation into methylphosphonate oligonucleotides for biodistribution and biostability studies
Nucl. Acids Res. 1995 23: 3600-3602; doi:10.1093/nar/23.17.3600 [Print PDF] [Request Permissions]  

Corrigendum:

E. A. Raleigh, N. E. Murray, H. Revel, R. M. Blumenthal, D. Westaway, A. D. Reith, P. W. J. Rigby, J. Elhai, and D. Hanahan

McrA and McrB restriction phenotypes of some E.coli strains and implications for gene cloning
Nucl. Acids Res. 1995 23: 3612; doi:10.1093/nar/23.17.3612 [Abstract] [Print PDF] [Request Permissions]  

Errata:

M. Engelhorn, F. Boccard, C. Murtin, P. Prentki, and J. Geiselmann

In vivo Interaction of the Escherichia coliintegration host factor with its specific binding sites
Nucl. Acids Res. 1995 23: 3612; doi:10.1093/nar/23.17.3612-a [Print PDF] [Request Permissions]  

Isabell Niemer, Carlo Schmelzer, and G. Valentin Börner

Overexpression of DEAD box protein pMSS116 promotes ATP-dependent splicing of a yeast group H intron in vitro
Nucl. Acids Res. 1995 23: 3612; doi:10.1093/nar/23.17.3612-b [Abstract] [Print PDF] [Request Permissions]  

Author index:

Author index
Nucl. Acids Res. 1995 23: 3612; doi:10.1093/nar/23.17.3612-c [Print PDF] [Request Permissions]  

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