Nucleic Acids Research

Reviews:

T Rein, ML DePamphilis, and H Zorbas

Identifying 5-methylcytosine and related modifications in DNA genomes
Nucl. Acids Res. 1998 26: 2255-2264; doi:10.1093/nar/26.10.2255 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Articles:

C Alexander, N Faber, and P Klaff

Characterization of protein-binding to the spinach chloroplast psbA mRNA 5' untranslated region
Nucl. Acids Res. 1998 26: 2265-2272; doi:10.1093/nar/26.10.2265 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

R Le Tinevez, RK Mishra, and JJ Toulme

Selective inhibition of cell-free translation by oligonucleotides targeted to a mRNA hairpin structure
Nucl. Acids Res. 1998 26: 2273-2278; doi:10.1093/nar/26.10.2273 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

J Ludwig, M Blaschke, and BS Sproat

Extending the cleavage rules for the hammerhead ribozyme: mutating adenosine15.1 to inosine15.1 changes the cleavage site specificity from N16.2U16.1H17 to N16.2C16.1H17
Nucl. Acids Res. 1998 26: 2279-2285; doi:10.1093/nar/26.10.2279 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

A Grigoriev

Analyzing genomes with cumulative skew diagrams
Nucl. Acids Res. 1998 26: 2286-2290; doi:10.1093/nar/26.10.2286 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

EE Prieschl, V Novotny, R Csonga, D Jaksche, A Elbe-Burger, W Thumb, M Auer, G Stingl, and T Baumruker

A novel splice variant of the transcription factor Nrf1 interacts with the TNFalpha promoter and stimulates transcription
Nucl. Acids Res. 1998 26: 2291-2297; doi:10.1093/nar/26.10.2291 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

LA Tomky, JK Strauss-Soukup, and LJ Maher, 3rd

Effects of phosphate neutralization on the shape of the AP-1 transcription factor binding site in duplex DNA
Nucl. Acids Res. 1998 26: 2298-2305; doi:10.1093/nar/26.10.2298 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Y Mandel-Gutfreund and H Margalit

Quantitative parameters for amino acid-base interaction: implications for prediction of protein-DNA binding sites
Nucl. Acids Res. 1998 26: 2306-2312; doi:10.1093/nar/26.10.2306 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

F Toledo, B Baron, MA Fernandez, AM Lachages, V Mayau, G Buttin, and M Debatisse

oriGNAI3: a narrow zone of preferential replication initiation in mammalian cells identified by 2D gel and competitive PCR replicon mapping techniques
Nucl. Acids Res. 1998 26: 2313-2321; doi:10.1093/nar/26.10.2313 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

P Lopez-Garcia, S Knapp, R Ladenstein, and P Forterre

In vitro DNA binding of the archaeal protein Sso7d induces negative supercoiling at temperatures typical for thermophilic growth
Nucl. Acids Res. 1998 26: 2322-2328; doi:10.1093/nar/26.10.2322 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M Shimizu, W Li, PA Covitz, M Hara, H Shindo, and AP Mitchell

Genomic footprinting of the yeast zinc finger protein Rme1p and its roles in repression of the meiotic activator IME1
Nucl. Acids Res. 1998 26: 2329-2336; doi:10.1093/nar/26.10.2329 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

J Schreiber, J Enderich, and M Wegner

Structural requirements for DNA binding of GCM proteins
Nucl. Acids Res. 1998 26: 2337-2343; doi:10.1093/nar/26.10.2337 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

I Sethy-Coraci, RD Moir, A Lopez-de-Leon, and IM Willis

A differential response of wild type and mutant promoters to TFIIIB70 overexpression in vivo and in vitro
Nucl. Acids Res. 1998 26: 2344-2352; doi:10.1093/nar/26.10.2344 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

MC Hirst and PJ White

Cloned human FMR1 trinucleotide repeats exhibit a length- and orientation-dependent instability suggestive of in vivo lagging strand secondary structure
Nucl. Acids Res. 1998 26: 2353-2358; doi:10.1093/nar/26.10.2353 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

WH Gmeiner, A Skradis, RT Pon, and J Liu

Cytarabine-induced destabilization of a model Okazaki fragment
Nucl. Acids Res. 1998 26: 2359-2365; doi:10.1093/nar/26.10.2359 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

R Meima, GJ Haan, G Venema, S Bron, and S de Jong

Sequence specificity of illegitimate plasmid recombination in Bacillus subtilis: possible recognition sites for DNA topoisomerase I
Nucl. Acids Res. 1998 26: 2366-2373; doi:10.1093/nar/26.10.2366 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

P Soultanas, MS Dillingham, and DB Wigley

Escherichia coli ribosomal protein L3 stimulates the helicase activity of the Bacillus stearothermophilus PcrA helicase
Nucl. Acids Res. 1998 26: 2374-2379; doi:10.1093/nar/26.10.2374 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

K Jo and MD Topal

Step-wise DNA relaxation and decatenation by NaeI-43K
Nucl. Acids Res. 1998 26: 2380-2384; doi:10.1093/nar/26.10.2380 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Z Lin, KN Hung, AP Grollman, and C de los Santos

Solution structure of duplex DNA containing an extrahelical abasic site analog determined by NMR spectroscopy and molecular dynamics
Nucl. Acids Res. 1998 26: 2385-2391; doi:10.1093/nar/26.10.2385 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

C Obuse, T Okazaki, and H Masukata

Interaction of transcription factor YY1 with a replication-enhancing element, REE1, in an autonomously replicating human chromosome fragment
Nucl. Acids Res. 1998 26: 2392-2397; doi:10.1093/nar/26.10.2392 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NJ van Orsouw, RK Dhanda, RD Rines, WM Smith, I Sigalas, C Eng, and J Vijg

Rapid design of denaturing gradient-based two-dimensional electrophoretic gene mutational scanning tests
Nucl. Acids Res. 1998 26: 2398-2406; doi:10.1093/nar/26.10.2398 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M Vogtli, C Elke, MO Imhof, and M Lezzi

High level transactivation by the ecdysone receptor complex at the core recognition motif
Nucl. Acids Res. 1998 26: 2407-2414; doi:10.1093/nar/26.10.2407 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

G Ira, E Svetlova, and J Filipski

Meiotic double-strand breaks in yeast artificial chromosomes containing human DNA
Nucl. Acids Res. 1998 26: 2415-2419; doi:10.1093/nar/26.10.2415 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

K Kimura, H Saga, K Hayashi, H Obata, Y Chimori, H Ariga, and K Sobue

c-Myc gene single-strand binding protein-1, MSSP-1, suppresses transcription of alpha-smooth muscle actin gene in chicken visceral smooth muscle cells
Nucl. Acids Res. 1998 26: 2420-2425; doi:10.1093/nar/26.10.2420 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

CD Carpenter and AE Simon

Analysis of sequences and predicted structures required for viral satellite RNA accumulation by in vivo genetic selection
Nucl. Acids Res. 1998 26: 2426-2432; doi:10.1093/nar/26.10.2426 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

CA Barnes

Upf1 and Upf2 proteins mediate normal yeast mRNA degradation when translation initiation is limited
Nucl. Acids Res. 1998 26: 2433-2441; doi:10.1093/nar/26.10.2433 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

FA Dick and BL Trumpower

Heterologous complementation reveals that mutant alleles of QSR1 render 60S ribosomal subunits unstable and translationally inactive
Nucl. Acids Res. 1998 26: 2442-2448; doi:10.1093/nar/26.10.2442 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

JM Li, MB Datto, X Shen, PP Hu, Y Yu, and XF Wang

Sp1, but not Sp3, functions to mediate promoter activation by TGF-beta through canonical Sp1 binding sites
Nucl. Acids Res. 1998 26: 2449-2456; doi:10.1093/nar/26.10.2449 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

SE Wilson and MC Smith

Oligomeric properties and DNA binding specificities of repressor isoforms from the Streptomyces bacteriophage phiC31
Nucl. Acids Res. 1998 26: 2457-2463; doi:10.1093/nar/26.10.2457 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

YZ Liu, IK Lee, I Locke, SJ Dawson, and DS Latchman

Adjacent proline residues in the inhibitory domain of the Oct-2 transcription factor play distinct functional roles
Nucl. Acids Res. 1998 26: 2464-2472; doi:10.1093/nar/26.10.2464 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

I Berger, V Tereshko, H Ikeda, VE Marquez, and M Egli

Crystal structures of B-DNA with incorporated 2'-deoxy-2'-fluoro- arabino-furanosyl thymines: implications of conformational preorganization for duplex stability
Nucl. Acids Res. 1998 26: 2473-2480; doi:10.1093/nar/26.10.2473 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

HG Hansma, R Golan, W Hsieh, CP Lollo, P Mullen-Ley, and D Kwoh

DNA condensation for gene therapy as monitored by atomic force microscopy
Nucl. Acids Res. 1998 26: 2481-2487; doi:10.1093/nar/26.10.2481 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NI Taranenko, SL Allman, VV Golovlev, NV Taranenko, NR Isola, and CH Chen

Sequencing DNA using mass spectrometry for ladder detection
Nucl. Acids Res. 1998 26: 2488-2490; doi:10.1093/nar/26.10.2488 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

H Nakshatri and P Bhat-Nakshatri

Multiple parameters determine the specificity of transcriptional response by nuclear receptors HNF-4, ARP-1, PPAR, RAR and RXR through common response elements
Nucl. Acids Res. 1998 26: 2491-2499; doi:10.1093/nar/26.10.2491 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

N Kholod, K Vassilenko, M Shlyapnikov, V Ksenzenko, and L Kisselev

Preparation of active tRNA gene transcripts devoid of 3'-extended products and dimers
Nucl. Acids Res. 1998 26: 2500-2501; doi:10.1093/nar/26.10.2500 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

L Wang and DE Ruffner

Oligoribonucleotide circularization by 'template-mediated' ligation with T4 RNA ligase: synthesis of circular hammerhead ribozymes
Nucl. Acids Res. 1998 26: 2502-2504; doi:10.1093/nar/26.10.2502 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

BS Rao and A Buckler-White

Direct visualization of site-specific and strand-specific DNA methylation patterns in automated DNA sequencing data
Nucl. Acids Res. 1998 26: 2505-2507; doi:10.1093/nar/26.10.2505 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

C Karreman

New positive/negative selectable markers for mammalian cells on the basis of Blasticidin deaminase-thymidine kinase fusions
Nucl. Acids Res. 1998 26: 2508-2510; doi:10.1093/nar/26.10.2508 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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