Nucleic Acids Research

Editorial:

Editorial
Nucl. Acids Res. 1999 27: 0; doi:10.1093/nar/27.1.0 [Print PDF] [Request Permissions]  

Articles:

C Burks

Molecular Biology Database List
Nucl. Acids Res. 1999 27: 1-9; doi:10.1093/nar/27.1.1 [Abstract] [FREE Full Text] [Database Listing] [Request Permissions]  

C Discala, M Ninnin, F Achard, E Barillot, and G Vaysseix

DBcat: a catalog of biological databases
Nucl. Acids Res. 1999 27: 10-11; doi:10.1093/nar/27.1.10 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

DA Benson, MS Boguski, DJ Lipman, J Ostell, BF Ouellette, BA Rapp, and DL Wheeler

GenBank
Nucl. Acids Res. 1999 27: 12-17; doi:10.1093/nar/27.1.12 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

G Stoesser, MA Tuli, R Lopez, and P Sterk

The EMBL Nucleotide Sequence Database
Nucl. Acids Res. 1999 27: 18-24; doi:10.1093/nar/27.1.18 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

H Sugawara, S Miyazaki, T Gojobori, and Y Tateno

DNA Data Bank of Japan dealing with large-scale data submission
Nucl. Acids Res. 1999 27: 25-28; doi:10.1093/nar/27.1.25 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

H Ogata, S Goto, K Sato, W Fujibuchi, H Bono, and M Kanehisa

KEGG: Kyoto Encyclopedia of Genes and Genomes
Nucl. Acids Res. 1999 27: 29-34; doi:10.1093/nar/27.1.29 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

MP Skupski, M Booker, A Farmer, M Harpold, W Huang, J Inman, D Kiphart, C Kodira, S Root, F Schilkey, J Schwertfeger, A Siepel, D Stamper, N Thayer, R Thompson, J Wortman, JJ Zhuang, and C Harger

The Genome Sequence DataBase: towards an integrated functional genomics resource
Nucl. Acids Res. 1999 27: 35-38; doi:10.1093/nar/27.1.35 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

WC Barker, JS Garavelli, PB McGarvey, CR Marzec, BC Orcutt, GY Srinivasarao, LS Yeh, RS Ledley, HW Mewes, F Pfeiffer, A Tsugita, and C Wu

The PIR-International Protein Sequence Database
Nucl. Acids Res. 1999 27: 39-43; doi:10.1093/nar/27.1.39 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

HW Mewes, K Heumann, A Kaps, K Mayer, F Pfeiffer, S Stocker, and D Frishman

MIPS: a database for genomes and protein sequences
Nucl. Acids Res. 1999 27: 44-48; doi:10.1093/nar/27.1.44 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

A Bairoch and R Apweiler

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999
Nucl. Acids Res. 1999 27: 49-54; doi:10.1093/nar/27.1.49 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

PD Karp, M Riley, SM Paley, A Pellegrini-Toole, and M Krummenacker

Eco Cyc: encyclopedia of Escherichia coli genes and metabolism
Nucl. Acids Res. 1999 27: 55-58; doi:10.1093/nar/27.1.55 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

H Salgado, A Santos, U Garza-Ramos, J van Helden, E Diaz, and J Collado-Vides

RegulonDB (version 2.0): a database on transcriptional regulation in Escherichia coli
Nucl. Acids Res. 1999 27: 59-60; doi:10.1093/nar/27.1.59 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M Choudhary, C Mackenzie, NJ Mouncey, and S Kaplan

RsGDB, the Rhodobacter sphaeroides Genome Database
Nucl. Acids Res. 1999 27: 61-62; doi:10.1093/nar/27.1.61 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

G Perriere, P Bessieres, and B Labedan

The Enhanced Microbial Genomes Library
Nucl. Acids Res. 1999 27: 63-65; doi:10.1093/nar/27.1.63 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Y Nakamura, T Kaneko, N Miyajima, and S Tabata

Extension of CyanoBase. CyanoMutants: repository of mutant information on Synechocystis sp. strain PCC6803
Nucl. Acids Res. 1999 27: 66-68; doi:10.1093/nar/27.1.66 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

PE Hodges, AH McKee, BP Davis, WE Payne, and JI Garrels

The Yeast Proteome Database (YPD): a model for the organization and presentation of genome-wide functional data
Nucl. Acids Res. 1999 27: 69-73; doi:10.1093/nar/27.1.69 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

SA Chervitz, ET Hester, CA Ball, K Dolinski, SS Dwight, MA Harris, G Juvik, A Malekian, S Roberts, T Roe, C Scafe, M Schroeder, G Sherlock, S Weng, Y Zhu, JM Cherry, and D Botstein

Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure
Nucl. Acids Res. 1999 27: 74-78; doi:10.1093/nar/27.1.74 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

SY Rhee, S Weng, DK Bongard-Pierce, M Garcia-Hernandez, A Malekian, DJ Flanders, and JM Cherry

Unified display of Arabidopsis thaliana physical maps from AtDB, the A.thaliana database
Nucl. Acids Res. 1999 27: 79-84; doi:10.1093/nar/27.1.79 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

The FlyBase database of the Drosophila Genome Projects and community literature. The FlyBase Consortium
Nucl. Acids Res. 1999 27: 85-88; doi:10.1093/nar/27.1.85 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

C Sanchez, C Lachaize, F Janody, B Bellon, L Roder, J Euzenat, F Rechenmann, and B Jacq

Grasping at molecular interactions and genetic networks in Drosophila melanogaster using FlyNets, an Internet database
Nucl. Acids Res. 1999 27: 89-94; doi:10.1093/nar/27.1.89 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

JA Blake, JE Richardson, MT Davisson, and JT Eppig

The Mouse Genome Database (MGD): genetic and genomic information about the laboratory mouse. The Mouse Genome Database Group
Nucl. Acids Res. 1999 27: 95-98; doi:10.1093/nar/27.1.95 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

CJ Bult, DM Krupke, and JT Eppig

Electronic access to mouse tumor data: the Mouse Tumor Biology Database (MTB) project
Nucl. Acids Res. 1999 27: 99-105; doi:10.1093/nar/27.1.99 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M Ringwald, ME Mangan, JT Eppig, JA Kadin, and JE Richardson

GXD: a gene expression database for the laboratory mouse. The Gene Expression Database Group
Nucl. Acids Res. 1999 27: 106-112; doi:10.1093/nar/27.1.106 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

F Achard, G Vaysseix, P Dessen, and E Barillot

Virgil database for rich links (1999 update)
Nucl. Acids Res. 1999 27: 113-114; doi:10.1093/nar/27.1.113 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

P Rodriguez-Tome and P Lijnzaad

The radiation hybrid database
Nucl. Acids Res. 1999 27: 115-118; doi:10.1093/nar/27.1.115 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

E Barillot, S Pook, F Guyon, C Cussat-Blanc, E Viara, and G Vaysseix

The HuGeMap Database: interconnection and visualization of human genome maps
Nucl. Acids Res. 1999 27: 119-122; doi:10.1093/nar/27.1.119 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

U Leser, H Roest Crollius, H Lehrach, and R Sudbrak

IXDB, an X chromosome integrated database (update)
Nucl. Acids Res. 1999 27: 123-127; doi:10.1093/nar/27.1.123 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M Attimonelli, N Altamura, R Benne, C Boyen, A Brennicke, A Carone, JM Cooper, D D'Elia, A de Montalvo, B de Pinto, M De Robertis, P Golik, JM Grienenberger, V Knoop, C Lanave, J Lazowska, A Lemagnen, BS Malladi, F Memeo, M Monnerot, S Pilbout, AH Schapira, P Sloof, P Slonimski, and C Saccone

MitBASE: a comprehensive and integrated mitochondrial DNA database
Nucl. Acids Res. 1999 27: 128-133; doi:10.1093/nar/27.1.128 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

C Lanave, M Attimonelli, M De Robertis, F Licciulli, S Liuni, E Sbisa, and C Saccone

Update of AMmtDB: a database of multi-aligned metazoa mitochondrial DNA sequences
Nucl. Acids Res. 1999 27: 134-137; doi:10.1093/nar/27.1.134 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

F Burckhardt, A von Haeseler, and S Meyer

HvrBase: compilation of mtDNA control region sequences from primates
Nucl. Acids Res. 1999 27: 138-142; doi:10.1093/nar/27.1.138 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M Attimonelli, JM Cooper, D D'Elia, A de Montalvo, M De Robertis, H Lehvaslaiho, SB Malladi, F Memeo, K Stevens, AH Schapira, and C Saccone

Update of the Human MitBASE database
Nucl. Acids Res. 1999 27: 143-146; doi:10.1093/nar/27.1.143 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

B de Pinto, SB Malladi, and N Altamura

MitBASE pilot: a database on nuclear genes involved in mitochondrial biogenesis and its regulation in Saccharomyces cerevisiae
Nucl. Acids Res. 1999 27: 147-149; doi:10.1093/nar/27.1.147 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

A Carone, SB Malladi, M Attimonelli, and C Saccone

Vertebrate MitBASE: a specialised database on vertebrate mitochondrial DNA sequences
Nucl. Acids Res. 1999 27: 150-152; doi:10.1093/nar/27.1.150 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

C Scharfe, P Zaccaria, K Hoertnagel, M Jaksch, T Klopstock, R Lill, H Prokisch, KD Gerbitz, HW Mewes, and T Meitinger

MITOP: database for mitochondria-related proteins, genes and diseases
Nucl. Acids Res. 1999 27: 153-155; doi:10.1093/nar/27.1.153 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

LR Ceci, M Volpicella, S Liuni, V Volpetti, F Licciulli, and R Gallerani

PLMItRNA, a database for higher plant mitochondrial tRNAs and tRNA genes
Nucl. Acids Res. 1999 27: 156-157; doi:10.1093/nar/27.1.156 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M Szymanski, MZ Barciszewska, J Barciszewski, and VA Erdmann

5S Ribosomal RNA Data Bank
Nucl. Acids Res. 1999 27: 158-160; doi:10.1093/nar/27.1.158 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

DA Samarsky and MJ Fournier

A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae
Nucl. Acids Res. 1999 27: 161-164; doi:10.1093/nar/27.1.161 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

KP Williams

The tmRNA website
Nucl. Acids Res. 1999 27: 165-166; doi:10.1093/nar/27.1.165 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

J Wower and C Zwieb

The tmRNA database (tmRDB)
Nucl. Acids Res. 1999 27: 167; doi:10.1093/nar/27.1.167 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

S Hinz and HU Goringer

The guide RNA database (3.0)
Nucl. Acids Res. 1999 27: 168; doi:10.1093/nar/27.1.168 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

T Samuelsson and C Zwieb

The Signal Recognition Particle Database (SRPDB)
Nucl. Acids Res. 1999 27: 169-170; doi:10.1093/nar/27.1.169 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

BL Maidak, JR Cole, CT Parker, Jr, GM Garrity, N Larsen, B Li, TG Lilburn, MJ McCaughey, GJ Olsen, R Overbeek, S Pramanik, TM Schmidt, JM Tiedje, and CR Woese

A new version of the RDP (Ribosomal Database Project)
Nucl. Acids Res. 1999 27: 171-173; doi:10.1093/nar/27.1.171 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

P De Rijk, E Robbrecht, S de Hoog, A Caers, Y Van de Peer, and R De Wachter

Database on the structure of large subunit ribosomal RNA
Nucl. Acids Res. 1999 27: 174-178; doi:10.1093/nar/27.1.174 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Y Van de Peer, E Robbrecht, S de Hoog, A Caers, P De Rijk, and R De Wachter

Database on the structure of small subunit ribosomal RNA
Nucl. Acids Res. 1999 27: 179-183; doi:10.1093/nar/27.1.179 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

PV Baranov, AV Kubarenko, OL Gurvich, TA Shamolina, and R Brimacombe

The Database of Ribosomal Cross-links: an update
Nucl. Acids Res. 1999 27: 184-185; doi:10.1093/nar/27.1.184 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

DA Lafontaine, P Deschenes, F Bussiere, V Poisson, and JP Perreault

The viroid and viroid-like RNA database
Nucl. Acids Res. 1999 27: 186-187; doi:10.1093/nar/27.1.186 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

G Pesole, S Liuni, G Grillo, M Ippedico, A Larizza, W Makalowski, and C Saccone

UTRdb: a specialized database of 5' and 3' untranslated regions of eukaryotic mRNAs
Nucl. Acids Res. 1999 27: 188-191; doi:10.1093/nar/27.1.188 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

VA Erdmann, M Szymanski, A Hochberg, N de Groot, and J Barciszewski

Collection of mRNA-like non-coding RNAs
Nucl. Acids Res. 1999 27: 192-195; doi:10.1093/nar/27.1.192 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

J Rozenski, PF Crain, and JA McCloskey

The RNA Modification Database: 1999 update
Nucl. Acids Res. 1999 27: 196-197; doi:10.1093/nar/27.1.196 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

JS Garavelli

The RESID Database of protein structure modifications
Nucl. Acids Res. 1999 27: 198-199; doi:10.1093/nar/27.1.198 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

CJ Stoeckert, Jr, F Salas, B Brunk, and GC Overton

EpoDB: a prototype database for the analysis of genes expressed during vertebrate erythropoiesis
Nucl. Acids Res. 1999 27: 200-203; doi:10.1093/nar/27.1.200 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

V Hawkins, D Doll, R Bumgarner, T Smith, C Abajian, L Hood, and PS Nelson

PEDB: the Prostate Expression Database
Nucl. Acids Res. 1999 27: 204-208; doi:10.1093/nar/27.1.204 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

MP Lefranc, V Giudicelli, C Ginestoux, J Bodmer, W Muller, R Bontrop, M Lemaitre, A Malik, V Barbie, and D Chaume

IMGT, the international ImMunoGeneTics database
Nucl. Acids Res. 1999 27: 209-212; doi:10.1093/nar/27.1.209 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

T Immervoll and M Wjst

Current status of the Asthma and Allergy Database
Nucl. Acids Res. 1999 27: 213-214; doi:10.1093/nar/27.1.213 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

K Hofmann, P Bucher, L Falquet, and A Bairoch

The PROSITE database, its status in 1999
Nucl. Acids Res. 1999 27: 215-219; doi:10.1093/nar/27.1.215 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

TK Attwood, DR Flower, AP Lewis, JE Mabey, SR Morgan, P Scordis, JN Selley, and W Wright

PRINTS prepares for the new millennium
Nucl. Acids Res. 1999 27: 220-225; doi:10.1093/nar/27.1.220 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

JG Henikoff, S Henikoff, and S Pietrokovski

New features of the Blocks Database servers
Nucl. Acids Res. 1999 27: 226-228; doi:10.1093/nar/27.1.226 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

CP Ponting, J Schultz, F Milpetz, and P Bork

SMART: identification and annotation of domains from signalling and extracellular protein sequences
Nucl. Acids Res. 1999 27: 229-232; doi:10.1093/nar/27.1.229 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

KN Degtyarenko, AC North, and JB Findlay

PROMISE: a database of bioinorganic motifs
Nucl. Acids Res. 1999 27: 233-236; doi:10.1093/nar/27.1.233 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

A Kreegipuu, N Blom, and S Brunak

PhosphoBase, a database of phosphorylation sites: release 2.0
Nucl. Acids Res. 1999 27: 237-239; doi:10.1093/nar/27.1.237 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

A Marchler-Bauer, KJ Addess, C Chappey, L Geer, T Madej, Y Matsuo, Y Wang, and SH Bryant

MMDB: Entrez's 3D structure database
Nucl. Acids Res. 1999 27: 240-243; doi:10.1093/nar/27.1.240 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

L Holm and C Sander

Protein folds and families: sequence and structure alignments
Nucl. Acids Res. 1999 27: 244-247; doi:10.1093/nar/27.1.244 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

VV Solovyev and AA Salamov

INFOGENE: a database of known gene structures and predicted genes and proteins in sequences of genome sequencing projects
Nucl. Acids Res. 1999 27: 248-250; doi:10.1093/nar/27.1.248 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

SE Brenner, D Barken, and M Levitt

The PRESAGE database for structural genomics
Nucl. Acids Res. 1999 27: 251-253; doi:10.1093/nar/27.1.251 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

TJ Hubbard, B Ailey, SE Brenner, AG Murzin, and C Chothia

SCOP: a Structural Classification of Proteins database
Nucl. Acids Res. 1999 27: 254-256; doi:10.1093/nar/27.1.254 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

J Murvai, K Vlahovicek, E Barta, C Szepesvari, C Acatrinei, and S Pongor

The SBASE protein domain library, release 6.0: a collection of annotated protein sequence segments
Nucl. Acids Res. 1999 27: 257-259; doi:10.1093/nar/27.1.257 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

A Bateman, E Birney, R Durbin, SR Eddy, RD Finn, and EL Sonnhammer

Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins
Nucl. Acids Res. 1999 27: 260-262; doi:10.1093/nar/27.1.260 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

F Corpet, J Gouzy, and D Kahn

Recent improvements of the ProDom database of protein domain families
Nucl. Acids Res. 1999 27: 263-267; doi:10.1093/nar/27.1.263 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

IA Adzhubei and AA Adzhubei

ISSD Version 2.0: taxonomic range extended
Nucl. Acids Res. 1999 27: 268-271; doi:10.1093/nar/27.1.268 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

CH Wu, S Shivakumar, and H Huang

ProClass Protein Family Database
Nucl. Acids Res. 1999 27: 272-274; doi:10.1093/nar/27.1.272 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

CA Orengo, FM Pearl, JE Bray, AE Todd, AC Martin, L Lo Conte, and JM Thornton

The CATH Database provides insights into protein structure/function relationships
Nucl. Acids Res. 1999 27: 275-279; doi:10.1093/nar/27.1.275 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

JM Carazo, EH Stelzer, A Engel, I Fita, C Henn, J Machtynger, P McNeil, DM Shotton, M Chagoyen, PA de Alarcon, R Fritsch, JB Heymann, S Kalko, JJ Pittet, P Rodriguez-Tome, and T Boudier

Organising multi-dimensional biological image information: the BioImage Database
Nucl. Acids Res. 1999 27: 280-283; doi:10.1093/nar/27.1.280 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

GY Srinivasarao, LS Yeh, CR Marzec, BC Orcutt, WC Barker, and F Pfeiffer

Database of protein sequence alignments: PIR-ALN
Nucl. Acids Res. 1999 27: 284-285; doi:10.1093/nar/27.1.284 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

MM Gromiha, J An, H Kono, M Oobatake, H Uedaira, and A Sarai

ProTherm: Thermodynamic Database for Proteins and Mutants
Nucl. Acids Res. 1999 27: 286-288; doi:10.1093/nar/27.1.286 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

C Hoogland, JC Sanchez, L Tonella, A Bairoch, DF Hochstrasser, and RD Appel

The SWISS-2DPAGE database: what has changed during the last year
Nucl. Acids Res. 1999 27: 289-291; doi:10.1093/nar/27.1.289 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

Y Nakamura, T Gojobori, and T Ikemura

Codon usage tabulated from the international DNA sequence databases; its status 1999
Nucl. Acids Res. 1999 27: 292; doi:10.1093/nar/27.1.292 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

ME Dalphin, PA Stockwell, WP Tate, and CM Brown

TransTerm, the translational signal database, extended to include full coding sequences and untranslated regions
Nucl. Acids Res. 1999 27: 293-294; doi:10.1093/nar/27.1.293 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

S Rombauts, P Dehais, M Van Montagu, and P Rouze

PlantCARE, a plant cis-acting regulatory element database
Nucl. Acids Res. 1999 27: 295-296; doi:10.1093/nar/27.1.295 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

K Higo, Y Ugawa, M Iwamoto, and T Korenaga

Plant cis-acting regulatory DNA elements (PLACE) database: 1999
Nucl. Acids Res. 1999 27: 297-300; doi:10.1093/nar/27.1.297 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

MS Gelfand, I Dubchak, I Dralyuk, and M Zorn

ASDB: database of alternatively spliced genes
Nucl. Acids Res. 1999 27: 301-302; doi:10.1093/nar/27.1.301 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NA Kolchanov, EA Ananko, OA Podkolodnaya, EV Ignatieva, IL Stepanenko, OV Kel- Margoulis, AE Kel, TI Merkulova, TN Goryachkovskaya, TV Busygina, FA Kolpakov, NL Podkolodny, AN Naumochkin, and AG Romashchenko

Transcription Regulatory Regions Database (TRRD):its status in 1999
Nucl. Acids Res. 1999 27: 303-306; doi:10.1093/nar/27.1.303 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

RC Perier, T Junier, C Bonnard, and P Bucher

The Eukaryotic Promoter Database (EPD): recent developments
Nucl. Acids Res. 1999 27: 307-309; doi:10.1093/nar/27.1.307 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

A Bairoch

The ENZYME data bank in 1999
Nucl. Acids Res. 1999 27: 310-311; doi:10.1093/nar/27.1.310 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

RJ Roberts and D Macelis

REBASE-restriction enzymes and methylases
Nucl. Acids Res. 1999 27: 312-313; doi:10.1093/nar/27.1.312 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

JW Brown

The Ribonuclease P Database
Nucl. Acids Res. 1999 27: 314; doi:10.1093/nar/27.1.314 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

D Ghosh

Object oriented Transcription Factors Database (ooTFD)
Nucl. Acids Res. 1999 27: 315-317; doi:10.1093/nar/27.1.315 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

T Heinemeyer, X Chen, H Karas, AE Kel, OV Kel, I Liebich, T Meinhardt, I Reuter, F Schacherer, and E Wingender

Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms
Nucl. Acids Res. 1999 27: 318-322; doi:10.1093/nar/27.1.318 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

I Makalowska, ES Ferlanti, AD Baxevanis, and D Landsman

Histone Sequence Database: sequences, structures, post-translational modifications and genetic loci
Nucl. Acids Res. 1999 27: 323-324; doi:10.1093/nar/27.1.323 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

ND Rawlings and AJ Barrett

MEROPS: the peptidase database
Nucl. Acids Res. 1999 27: 325-331; doi:10.1093/nar/27.1.325 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M Szymanski and J Barciszewski

The aminoacyl-tRNA Synthetase Data Bank (AARSDB)
Nucl. Acids Res. 1999 27: 332-335; doi:10.1093/nar/27.1.332 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

S Banerjee-Basu, ES Ferlanti, JF Ryan, and AD Baxevanis

The Homeodomain Resource: sequences, structures and genomic information
Nucl. Acids Res. 1999 27: 336-337; doi:10.1093/nar/27.1.336 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M Suyama, T Nagase, and O Ohara

HUGE: a database for human large proteins identified by Kazusa cDNA sequencing project
Nucl. Acids Res. 1999 27: 338-339; doi:10.1093/nar/27.1.338 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

N Le Novere and JP Changeux

The Ligand Gated Ion Channel Database
Nucl. Acids Res. 1999 27: 340-342; doi:10.1093/nar/27.1.340 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

E Skoufos, MD Healy, MS Singer, PM Nadkarni, PL Miller, and GM Shepherd

Olfactory Receptor Database: a database of the largest eukaryotic gene family
Nucl. Acids Res. 1999 27: 343-345; doi:10.1093/nar/27.1.343 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

FB Perler

InBase, the New England Biolabs Intein Database
Nucl. Acids Res. 1999 27: 346-347; doi:10.1093/nar/27.1.346 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

RW Shafer, D Stevenson, and B Chan

Human Immunodeficiency Virus Reverse Transcriptase and Protease Sequence Database
Nucl. Acids Res. 1999 27: 348-352; doi:10.1093/nar/27.1.348 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

F Dorkeld, A Bernheim, P Dessen, and JL Huret

A database on cytogenetics in haematology and oncology
Nucl. Acids Res. 1999 27: 353-354; doi:10.1093/nar/27.1.353 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

T Kawabata, M Ota, and K Nishikawa

The Protein Mutant Database
Nucl. Acids Res. 1999 27: 355-357; doi:10.1093/nar/27.1.355 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

S Minoshima, S Mitsuyama, S Ohno, T Kawamura, and N Shimizu

Keio Mutation Database for eye disease genes (KMeyeDB)
Nucl. Acids Res. 1999 27: 358-361; doi:10.1093/nar/27.1.358 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

KA Stenberg, PT Riikonen, and M Vihinen

KinMutBase, a database of human disease-causing protein kinase mutations
Nucl. Acids Res. 1999 27: 362-364; doi:10.1093/nar/27.1.362 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

F Licciulli, D Catalano, D D'Elia, V Lorusso, and M Attimonelli

KEYnet: a keywords database for biosequences functional organization
Nucl. Acids Res. 1999 27: 365-367; doi:10.1093/nar/27.1.365 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

S Kawashima, H Ogata, and M Kanehisa

AAindex: Amino Acid Index Database
Nucl. Acids Res. 1999 27: 368-369; doi:10.1093/nar/27.1.368 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

R Gupta, H Birch, K Rapacki, S Brunak, and JE Hansen

O-GLYCBASE version 4.0: a revised database of O-glycosylated proteins
Nucl. Acids Res. 1999 27: 370-372; doi:10.1093/nar/27.1.370 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

LB Ellis, CD Hershberger, and LP Wackett

The University of Minnesota Biocatalysis/Biodegradation Database: specialized metabolism for functional genomics
Nucl. Acids Res. 1999 27: 373-376; doi:10.1093/nar/27.1.373 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

S Goto, T Nishioka, and M Kanehisa

LIGAND database for enzymes, compounds and reactions
Nucl. Acids Res. 1999 27: 377-379; doi:10.1093/nar/27.1.377 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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