Nucleic Acids Research

Articles:

DD Leipe, L Aravind, and EV Koonin

Did DNA replication evolve twice independently?
Nucl. Acids Res. 1999 27: 3389-3401; doi:10.1093/nar/27.17.3389 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

B Martin, A Vaquero, W Priebe, and J Portugal

Bisanthracycline WP631 inhibits basal and Sp1-activated transcription initiation in vitro
Nucl. Acids Res. 1999 27: 3402-3409; doi:10.1093/nar/27.17.3402 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M Lombaerts, PH Peltola, R Visse, H den Dulk, JA Brandsma, and J Brouwer

Characterization of the rhp7(+) and rhp16(+) genes in Schizosaccharomyces pombe
Nucl. Acids Res. 1999 27: 3410-3416; doi:10.1093/nar/27.17.3410 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

AC Verrotti, C Wreden, and S Strickland

Dissociation of mRNA cytoplasmic polyadenylation from translational activation by structural modification of the 5'-UTR
Nucl. Acids Res. 1999 27: 3417-3423; doi:10.1093/nar/27.17.3417 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

RF Hough, AT Lingam, and BL Bass

Caenorhabditis elegans mRNAs that encode a protein similar to ADARs derive from an operon containing six genes
Nucl. Acids Res. 1999 27: 3424-3432; doi:10.1093/nar/27.17.3424 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

RC Keller, R Mossi, G Maga, RE Wellinger, U Hubscher, and JM Sogo

Electron microscopic analysis reveals that replication factor C is sequestered by single-stranded DNA
Nucl. Acids Res. 1999 27: 3433-3437; doi:10.1093/nar/27.17.3433 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

MP Thomas, RL Brady, SE Halford, RB Sessions, and GS Baldwin

Structural analysis of a mutational hot-spot in the EcoRV restriction endonuclease: a catalytic role for a main chain carbonyl group
Nucl. Acids Res. 1999 27: 3438-3445; doi:10.1093/nar/27.17.3438 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

SR Bruce, CS Kaetzel, and ML Peterson

Cryptic intron activation within the large exon of the mouse polymeric immunoglobulin receptor gene: cryptic splice sites correspond to protein domain boundaries
Nucl. Acids Res. 1999 27: 3446-3454; doi:10.1093/nar/27.17.3446 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

BG Luukkonen and B Seraphin

A conditional U5 snRNA mutation affecting pre-mRNA splicing and nuclear pre-mRNA retention identifies SSD1/SRK1 as a general splicing mutant suppressor
Nucl. Acids Res. 1999 27: 3455-3465; doi:10.1093/nar/27.17.3455 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

J Kypr, J Chladkova, M Zimulova, and M Vorlickova

Aqueous trifluorethanol solutions simulate the environment of DNA in the crystalline state
Nucl. Acids Res. 1999 27: 3466-3473; doi:10.1093/nar/27.17.3466 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

A Simoncsits, ML Tjornhammar, S Wang, and S Pongor

Isolation of altered specificity mutants of the single-chain 434 repressor that recognize asymmetric DNA sequences containing the TTAA and TTAC subsites
Nucl. Acids Res. 1999 27: 3474-3480; doi:10.1093/nar/27.17.3474 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

LC Kroutil and TA Kunkel

Deletion errors generated during replication of CAG repeats
Nucl. Acids Res. 1999 27: 3481-3486; doi:10.1093/nar/27.17.3481 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

K Purnapatre, P Handa, J Venkatesh, and U Varshney

Differential effects of single-stranded DNA binding proteins (SSBs) on uracil DNA glycosylases (UDGs) from Escherichia coli and mycobacteria
Nucl. Acids Res. 1999 27: 3487-3492; doi:10.1093/nar/27.17.3487 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

M Drummond and J Stamper

DNAPROBE, a computer program which generates oligonucleotide probes from protein alignments
Nucl. Acids Res. 1999 27: 3493; doi:10.1093/nar/27.17.3493 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

D Gell and SP Jackson

Mapping of protein-protein interactions within the DNA-dependent protein kinase complex
Nucl. Acids Res. 1999 27: 3494-3502; doi:10.1093/nar/27.17.3494 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

P Mackiewicz, M Kowalczuk, A Gierlik, MR Dudek, and S Cebrat

Origin and properties of non-coding ORFs in the yeast genome
Nucl. Acids Res. 1999 27: 3503-3509; doi:10.1093/nar/27.17.3503 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

MC Morris, L Chaloin, J Mery, F Heitz, and G Divita

A novel potent strategy for gene delivery using a single peptide vector as a carrier
Nucl. Acids Res. 1999 27: 3510-3517; doi:10.1093/nar/27.17.3510 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

J Deckert, RA Khalaf, SM Hwang, and RS Zitomer

Characterization of the DNA binding and bending HMG domain of the yeast hypoxic repressor Rox1
Nucl. Acids Res. 1999 27: 3518-3526; doi:10.1093/nar/27.17.3518 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

E Ramirez-Parra, Q Xie, MB Boniotti, and C Gutierrez

The cloning of plant E2F, a retinoblastoma-binding protein, reveals unique and conserved features with animal G(1)/S regulators
Nucl. Acids Res. 1999 27: 3527-3533; doi:10.1093/nar/27.17.3527 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

S Michalowski, JW Miller, CR Urbinati, M Paliouras, MS Swanson, and J Griffith

Visualization of double-stranded RNAs from the myotonic dystrophy protein kinase gene and interactions with CUG-binding protein
Nucl. Acids Res. 1999 27: 3534-3542; doi:10.1093/nar/27.17.3534 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

CS Yarian, MM Basti, RJ Cain, G Ansari, RH Guenther, E Sochacka, G Czerwinska, A Malkiewicz, and PF Agris

Structural and functional roles of the N1- and N3-protons of psi at tRNA's position 39
Nucl. Acids Res. 1999 27: 3543-3549; doi:10.1093/nar/27.17.3543 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

D Kosztin, RI Gumport, and K Schulten

Probing the role of structural water in a duplex oligodeoxyribonucleotide containing a water-mimicking base analog
Nucl. Acids Res. 1999 27: 3550-3556; doi:10.1093/nar/27.17.3550 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

DK Orren, Brosh , RMJr, JO Nehlin, A Machwe, MD Gray, and VA Bohr

Enzymatic and DNA binding properties of purified WRN protein: high affinity binding to single-stranded DNA but not to DNA damage induced by 4NQO
Nucl. Acids Res. 1999 27: 3557-3566; doi:10.1093/nar/27.17.3557 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

EP Rocha, A Danchin, and A Viari

Translation in Bacillus subtilis: roles and trends of initiation and termination, insights from a genome analysis
Nucl. Acids Res. 1999 27: 3567-3576; doi:10.1093/nar/27.17.3567 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

SS Hannenhalli, WS Hayes, AG Hatzigeorgiou, and JW Fickett

Bacterial start site prediction
Nucl. Acids Res. 1999 27: 3577-3582; doi:10.1093/nar/27.17.3577 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

E Madore, C Florentz, R Giege, and J Lapointe

Magnesium-dependent alternative foldings of active and inactive Escherichia coli tRNA(Glu) revealed by chemical probing
Nucl. Acids Res. 1999 27: 3583-3588; doi:10.1093/nar/27.17.3583 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

PM Vallone and AS Benight

Melting studies of short DNA hairpins containing the universal base 5- nitroindole
Nucl. Acids Res. 1999 27: 3589-3596; doi:10.1093/nar/27.17.3589 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

A Sambandam and MM Greenberg

The effects of 5R-5,6-dihydro-5-hydroxythymidine on duplex DNA stability and structure
Nucl. Acids Res. 1999 27: 3597-3602; doi:10.1093/nar/27.17.3597 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

AO Gramolini and BJ Jasmin

Expression of the utrophin gene during myogenic differentiation
Nucl. Acids Res. 1999 27: 3603-3609; doi:10.1093/nar/27.17.3603 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

S Li, M Livingstone-Zatchej, R Gupta, M Meijer, F Thoma, and MJ Smerdon

Nucleotide excision repair in a constitutive and inducible gene of a yeast minichromosome in intact cells
Nucl. Acids Res. 1999 27: 3610-3620; doi:10.1093/nar/27.17.3610 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NA Timchenko, M Wilde, P Iakova, JH Albrecht, and GJ Darlington

E2F/p107 and E2F/p130 complexes are regulated by C/EBPalpha in 3T3-L1 adipocytes
Nucl. Acids Res. 1999 27: 3621-3630; doi:10.1093/nar/27.17.3621 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

NAR Methods Online:

NV Ravin and VK Ravin

Use of a linear multicopy vector based on the mini-replicon of temperate coliphage N15 for cloning DNA with abnormal secondary structures
Nucl. Acids Res. 1999 27: e13; doi:10.1093/nar/27.17.e13 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

JG Harrison, X Liu, and S Balasubramanian

Screening for oligonucleotide binding affinity by a convenient fluorescence competition assay
Nucl. Acids Res. 1999 27: e14; doi:10.1093/nar/27.17.e14 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

PB van Deursen, AW Gunther, CC van Riel, MM van der Eijnden, HL Vos, B van Gemen, DA van Strijp, NM Tackent, and RM Bertina

A novel quantitative multiplex NASBA method: application to measuring tissue factor and CD14 mRNA levels in human monocytes
Nucl. Acids Res. 1999 27: e15; doi:10.1093/nar/27.17.e15 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

PO Angrand, N Daigle, F van der Hoeven, HR Scholer, and AF Stewart

Simplified generation of targeting constructs using ET recombination
Nucl. Acids Res. 1999 27: e16; doi:10.1093/nar/27.17.e16 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

A van den Berg, J van der Leij, and S Poppema

Serial analysis of gene expression: rapid RT-PCR analysis of unknown SAGE tags
Nucl. Acids Res. 1999 27: e17; doi:10.1093/nar/27.17.e17 [Abstract] [FREE Full Text] [Print PDF] [Request Permissions]  

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